RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 GK2Q14410 553 aaPredicted RBP9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 ZNF404Q494X3 552 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 SPATS1Q496A3 300 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 KLF17Q5JT82 389 aaPredicted RBP9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 PGBD2Q6P3X8 592 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 LRRN1Q6UXK5 716 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 OR8B3Q8NGG8 313 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 OR52L1Q8NGH7 329 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 OR11L1Q8NGX0 322 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 Q8TCH9 128 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 GNPDA2Q8TDQ7 276 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 NEIL1Q96FI4 390 aaPredicted RBP9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 OR8B2Q96RD0 313 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 SLC22A4Q9H015 551 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 WDR76Q9H967 626 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 TMEM165Q9HC07 324 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 PNRC2Q9NPJ4 139 aaKnown RBP9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 CD300AQ9UGN4 299 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 MGAM2Q2M2H8 2515 aa9.68□□□□□ -0.86
SQSTM1-203ENST00000422245 DOCK11Q5JSL3 2073 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 IGHV2-70DA0A0C4DH43 119 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 OR6C68A6NDL8 312 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 DNAJC9-AS1A6NH13 148 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 CLDN34H7C241 214 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 M0R135 149 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 PHYHO14832 338 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 ATP8B1O43520 1251 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 SPRY1O43609 319 aaPredicted RBP9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 KRT36O76013 467 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 LCATP04180 440 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 HKR1P10072 659 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 ZNF823P16415 610 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 CD200P41217 278 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 PITPNBP48739 271 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 TPTEP56180 551 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 GNB2P62879 340 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 PAX2Q02962 417 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 FOXL1Q12952 345 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 RSPO1Q2MKA7 263 aaPredicted RBP9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 C16orf89Q6UX73 402 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 C9orf139Q6ZV77 190 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 PGAP1Q75T13 922 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 MRPL21Q7Z2W9 205 aaKnown RBP9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 ZDHHC21Q8IVQ6 265 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 PARP8Q8N3A8 854 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 LINC00471Q8N535 108 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 PROKR2Q8NFJ6 384 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 OR52E2Q8NGJ4 325 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 OR4C15Q8NGM1 316 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 OR2T4Q8NH00 348 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 SPTSSAQ969W0 71 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 DACT3Q96B18 629 aaPredicted RBP9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 ZNF799Q96GE5 643 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 TMEM246Q9BRR3 403 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 FN3KQ9H479 309 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 MRPL22Q9NWU5 206 aaKnown RBP9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 TAGLN3Q9UI15 199 aa9.67□□□□□ -0.86
SQSTM1-203ENST00000422245 IGHV3-64DA0A0J9YX35 117 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 ZNF205O95201 554 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 HLA-DPB1P04440 258 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 RNASE1P07998 156 aaKnown RBP9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 CD80P33681 288 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 MTNR1AP48039 350 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 RAD23AP54725 363 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 BAMBIQ13145 260 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 CLEC12AQ5QGZ9 265 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 SLC35F1Q5T1Q4 408 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 DCDC5Q6ZRR9 648 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 CPLX4Q7Z7G2 160 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 SPRYD4Q8WW59 207 aaPredicted RBP9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 RAB40AQ8WXH6 277 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 SLCO4A1Q96BD0 722 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 UPRTQ96BW1 309 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 MAP6Q96JE9 813 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 CDRT15Q96T59 188 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 MS4A7Q9GZW8 240 aaPredicted RBP9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 OPA3Q9H6K4 179 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 CLN8Q9UBY8 286 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 LYVE1Q9Y5Y7 322 aa9.66□□□□□ -0.86
SQSTM1-203ENST00000422245 TRAV40A0A0B4J280 105 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 CD300LBA8K4G0 201 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 BHLHE40O14503 412 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 FAM20BO75063 409 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 PLATP00750 562 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 IGHV4-38-2P0DP08 117 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 EGR1P18146 543 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 OTX1P32242 354 aaPredicted RBP9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 PYCR1P32322 319 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 PMELP40967 661 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 HMGA2P52926 109 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 PRSS12P56730 875 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 DBPQ10586 325 aaPredicted RBP9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 MAB21L1Q13394 359 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 OR8G1Q15617 311 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 KCNJ8Q15842 424 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 FAM201AQ5SY85 155 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 SHISA2Q6UWI4 295 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 DRAM2Q6UX65 266 aa9.65□□□□□ -0.86
SQSTM1-203ENST00000422245 DEFB107AQ8IZN7 70 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms