RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 PVALBP20472 110 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 CTSSP25774 331 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 CAPZBP47756 277 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 BLKP51451 505 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 BLOC1S1P78537 153 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 GPM6BQ13491 265 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 TAF13Q15543 124 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 KCNMB1Q16558 191 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 MOGAT2Q3SYC2 334 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC25A53Q5H9E4 307 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 C1orf140Q5VVS0 124 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 HAGHLQ6PII5 290 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 LRRC69Q6ZNQ3 347 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 MDGA2Q7Z553 956 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 TMED4Q7Z7H5 227 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 TRAPPC6BQ86SZ2 158 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SHISA5Q8N114 240 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 C12orf76Q8N812 135 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 OR4D6Q8NGJ1 314 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 OR4A4PQ8NGN8 299 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 OR8S1Q8NH09 359 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF563Q8TA94 476 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SNIP1Q8TAD8 396 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 DOK4Q8TEW6 326 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF524Q96C55 264 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SHDQ96IW2 340 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 NRIP2Q9BQI9 281 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC5A7Q9GZV3 580 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 NXF5Q9H1B4 397 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 ARV1Q9H2C2 271 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 WSB2Q9NYS7 404 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 CTSFQ9UBX1 484 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 MLXQ9UH92 298 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SRPK3Q9UPE1 567 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 TMED7-TICAM2A0A0A6YYA0 188 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 A0A1B0GW64 132 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM235A6NFC5 223 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 FOXI3A8MTJ6 420 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM157AC9JC47 383 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 RRP8O43159 456 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SSX5O60225 188 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC16A7O60669 478 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SPARCP09486 303 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 VSIG8P0DPA2 414 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 DRD1P21728 446 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 ID4P47928 161 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SULT1A2P50226 295 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 HHEXQ03014 270 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 EBPQ15125 230 aaKnown RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 CDNFQ49AH0 187 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM74A1Q5RGS3 127 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 AVPI1Q5T686 147 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 Q6ZSR6 202 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 Q7L0L9 218 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 ANGPTL5Q86XS5 388 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC22A18ASQ8N1D0 253 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM160A2Q8N612 972 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 GPR119Q8TDV5 335 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM234Q8WY98 164 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 C2orf50Q96LR7 162 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 C1orf147Q96MC9 270 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 TAAR9Q96RI9 348 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 MAP3K3Q99759 626 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 CMKLR1Q99788 373 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 KXD1Q9BQD3 176 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SMDT1Q9H4I9 107 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 CNTD2Q9H8S5 307 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SEC61A2Q9H9S3 476 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 FN3KRPQ9HA64 309 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 SEMA5BQ9P283 1151 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 FBXO4Q9UKT5 387 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 TMED7Q9Y3B3 224 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 MSRB2Q9Y3D2 182 aa5.11□□□□□ -1.59
CCDC88A-203ENST00000412148 H0Y8X5 98 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 H7C1C5 153 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 ICOSLGO75144 302 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 AHSA1O95433 338 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 PLATP00750 562 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 IGLV3-1P01715 115 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TTRP02766 147 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 CSTBP04080 98 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 DCNP07585 359 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 FCGR3AP08637 254 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 GLULP15104 373 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 PGAM2P15259 253 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF28P17035 718 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 LMO1P25800 156 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 FNTBP49356 437 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 SUCLG1P53597 346 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TAS2R46P59540 309 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 LCN6P62502 163 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM3AP98173 230 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 AIMP2Q13155 320 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM268Q5VZI3 342 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 H3F3CQ6NXT2 135 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 C16orf54Q6UWD8 224 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 BTNL8Q6UX41 500 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 C6orf15Q6UXA7 325 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 ZSCAN4Q8NAM6 433 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 OR51A2Q8NGJ7 313 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms