RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 DDX28Q9NUL7 540 aaKnown RBP3.24□□□□□ -1.89
RTN4-208ENST00000404909 ZNF224Q9NZL3 707 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 ZNF319Q9P2F9 582 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 HHLA2Q9UM44 414 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 AK6Q9Y3D8 172 aaKnown RBP3.24□□□□□ -1.89
RTN4-208ENST00000404909 HIVEP3Q5T1R4 2406 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 E9PLN8 166 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 PIN1P1O15428 100 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 SYNGR3O43761 229 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 SC5DO75845 299 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 GATBO75879 557 aaKnown RBP3.24□□□□□ -1.89
RTN4-208ENST00000404909 IL1AP01583 271 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 TTRP02766 147 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 CD1AP06126 327 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 CD2P06729 351 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 MMP7P09237 267 aaPredicted RBP3.24□□□□□ -1.89
RTN4-208ENST00000404909 ACSM4P0C7M7 580 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 SFTPCP11686 197 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 MAPK3P27361 379 aaPredicted RBP3.24□□□□□ -1.89
RTN4-208ENST00000404909 TIMP3P35625 211 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 GNALP38405 381 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 SH3BGRP55822 239 aaPredicted RBP3.24□□□□□ -1.89
RTN4-208ENST00000404909 TPTEP56180 551 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 PRSS12P56730 875 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 HIST1H3AP68431 136 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 PLP2Q04941 152 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 LSAMPQ13449 338 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 GSG1Q2KHT4 349 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 NRN1LQ496H8 165 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 DMRTC1Q5HYR2 192 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 IDNKQ5T6J7 187 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 HIST2H3PS2Q5TEC6 136 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 TMEM244Q5VVB8 128 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 FDX2Q6P4F2 183 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 HIST2H3AQ71DI3 136 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 CXorf67Q86X51 503 aaPredicted RBP3.24□□□□□ -1.89
RTN4-208ENST00000404909 ELMOD2Q8IZ81 293 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 OR2AE1Q8NHA4 323 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 RPS4Y2Q8TD47 263 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 BCL2L2Q92843 193 aaPredicted RBP3.24□□□□□ -1.89
RTN4-208ENST00000404909 FAM210AQ96ND0 272 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 DERL3Q96Q80 235 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 SOX7Q9BT81 388 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 BARHL1Q9BZE3 327 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 OR51B6Q9H340 312 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 CXorf56Q9H5V9 222 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 NOX3Q9HBY0 568 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 GPR84Q9NQS5 396 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 PLSCR4Q9NRQ2 329 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 NUFIP1Q9UHK0 495 aaKnown RBP3.24□□□□□ -1.89
RTN4-208ENST00000404909 DAPK2Q9UIK4 370 aa3.24□□□□□ -1.89
RTN4-208ENST00000404909 ARHGAP21Q5T5U3 1957 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 A0A0G2JNJ9 132 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 A0A1B0GVI7 797 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 OR6C6A6NF89 314 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 ERVH48-1M5A8F1 160 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 LMX1BO60663 402 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 HOXD4P09016 255 aaPredicted RBP3.23□□□□□ -1.89
RTN4-208ENST00000404909 UCHL1P09936 223 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 UBCP0CG48 685 aaKnown RBP3.23□□□□□ -1.89
RTN4-208ENST00000404909 EDN3P14138 238 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 GALP22466 123 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 CTSSP25774 331 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 STOMP27105 288 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 DCTDP32321 178 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 MTNR1BP49286 362 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 CASP6P55212 293 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 HGFACQ04756 655 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 ECH1Q13011 328 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 MADCAM1Q13477 382 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 SNAI3Q3KNW1 292 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 TMEM53Q6P2H8 277 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 MDP1Q86V88 176 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 NR2C2APQ86WQ0 139 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 DNAAF1Q8NEP3 725 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 ASB5Q8WWX0 329 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 NANOS1Q8WY41 292 aaKnown RBP3.23□□□□□ -1.89
RTN4-208ENST00000404909 NKX3-1Q99801 234 aaPredicted RBP3.23□□□□□ -1.89
RTN4-208ENST00000404909 SLITRK2Q9H156 845 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 COMMD3Q9UBI1 195 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 Q9UFV3 132 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 COL12A1Q99715 3063 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 ANKHD1Q8IWZ3 2542 aaKnown RBP3.23□□□□□ -1.89
RTN4-208ENST00000404909 TRAV8-7A0A075B6U6 113 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 LOC100509620A0A075B734 347 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 TRBV5-5A0A0J9YX44 114 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 IQCMA0A1B0GVH7 501 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 CTDSP2O14595 271 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 AGFG2O95081 481 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 UBL3O95164 117 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 APOC1P02654 83 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 RAB3BP20337 219 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 CRYGSP22914 178 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 S100A5P33763 92 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 ARR3P36575 388 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 IDH3GP51553 393 aaPredicted RBP3.23□□□□□ -1.89
RTN4-208ENST00000404909 CEP78Q5JTW2 689 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 BEND4Q6ZU67 534 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 ZNF627Q7L945 461 aa3.23□□□□□ -1.89
RTN4-208ENST00000404909 GABRG1Q8N1C3 465 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms