RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 LIME1Q9H400 295 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 CAB39LQ9H9S4 337 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 EBF2Q9HAK2 575 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 C6orf50Q9HD87 102 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 IL1RAPQ9NPH3 570 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 Q9UF83 564 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 RIMS3Q9UJD0 308 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 FAM32AQ9Y421 112 aaKnown RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 MTCH2Q9Y6C9 303 aa3.35□□□□□ -1.87
HMGB1-204ENST00000399489 NPHP4O75161 1426 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-204ENST00000399489 PLXNC1O60486 1568 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 NUP155O75694 1391 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 SETD1AO15047 1707 aaKnown RBP3.34□□□□□ -1.87
HMGB1-204ENST00000399489 ABCC1P33527 1531 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 CKAP5Q14008 2032 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 A0A0B4J2E0 115 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 IGHV3-20A0A0C4DH32 117 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 A0A1B0GX12 115 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 MSGN1A6NI15 193 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 EFCAB7A8K855 629 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 LYRM9A8MSI8 78 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 NPIPB9F8W1W9 429 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 G3V3Y1 287 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 J3QLI3 93 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 ACOX3O15254 700 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 LINC01565O15544 149 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 CTNSO60931 367 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 AQP8O94778 261 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 MPZL1O95297 269 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 SNAP29O95721 258 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 NUDT14O95848 222 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 IGHV3-9P01782 118 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 CALB1P05937 261 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 GUSBP08236 651 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 FCGR3AP08637 254 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 CT45A6P0DMU7 189 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 CT45A5P0DMU8 189 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 CT45A7P0DMV0 189 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF12P17014 697 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 IGFBP3P17936 291 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-204ENST00000399489 IDH2P48735 452 aaKnown RBP3.34□□□□□ -1.87
HMGB1-204ENST00000399489 HCCSP53701 268 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 UNC119Q13432 240 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 IL18R1Q13478 541 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 GPNMBQ14956 572 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 TECRLQ5HYJ1 363 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 CT45A1Q5HYN5 189 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 GCSAMLQ5JQS6 135 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 CPTPQ5TA50 214 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 SYPL2Q5VXT5 272 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 MEDAGQ5VYS4 303 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 LPCAT4Q643R3 524 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 Q6ZT83 130 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 FAM92BQ6ZTR7 304 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 CBLN2Q8IUK8 224 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 LACC1Q8IV20 430 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 FAM71AQ8IYT1 594 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 PRR22Q8IZ63 422 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF491Q8N8L2 437 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 ATP6V1C2Q8NEY4 427 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 OR5L1Q8NGL2 311 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 OR2G2Q8NGZ5 317 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 CT45A3Q8NHU0 189 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 BLOC1S5Q8TDH9 187 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 FRAT1Q92837 279 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-204ENST00000399489 SGTBQ96EQ0 304 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 SEC22AQ96IW7 307 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 ADTRPQ96IZ2 230 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 ZNF681Q96N22 645 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 PRAP1Q96NZ9 151 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 COL21A1Q96P44 957 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 NIPSNAP1Q9BPW8 284 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 AGMATQ9BSE5 352 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 ULBP1Q9BZM6 244 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 WDR41Q9HAD4 459 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 SIAEQ9HAT2 523 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 MYOZ1Q9NP98 299 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-204ENST00000399489 FBXO8Q9NRD0 319 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 GNPTGQ9UJJ9 305 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 MMP17Q9ULZ9 603 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 SAMD4AQ9UPU9 718 aaKnown RBP3.34□□□□□ -1.87
HMGB1-204ENST00000399489 RNF17Q9BXT8 1623 aaKnown RBP3.34□□□□□ -1.87
HMGB1-204ENST00000399489 TROQ12816 1431 aaPredicted RBP3.34□□□□□ -1.87
HMGB1-204ENST00000399489 KIDINS220Q9ULH0 1771 aa3.34□□□□□ -1.87
HMGB1-204ENST00000399489 KIF24Q5T7B8 1368 aa3.34□□□□□ -1.88
HMGB1-204ENST00000399489 TNRQ92752 1358 aa3.34□□□□□ -1.88
HMGB1-204ENST00000399489 ARHGAP5Q13017 1502 aa3.34□□□□□ -1.88
HMGB1-204ENST00000399489 PCDH11XQ9BZA7 1347 aa3.34□□□□□ -1.88
HMGB1-204ENST00000399489 KIF14Q15058 1648 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 COL22A1Q8NFW1 1626 aaPredicted RBP3.33□□□□□ -1.88
HMGB1-204ENST00000399489 A0A1B0GV72 72 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 MEIOCA2RUB1 952 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 FTCDNL1E5RQL4 147 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 H3BNH8 94 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 DFFAO00273 331 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 TGOLN2O43493 480 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 DPM1O60762 260 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 SERPINA1P01009 418 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 APOC1P02654 83 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 HOXC4P09017 264 aaPredicted RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms