RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TEAD3Q99594 435 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 NUBP2Q9Y5Y2 271 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 MUC3AQ02505 3323 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 DSPPQ9NZW4 1301 aa9.17□□□□□ -0.94
COL6A3-205ENST00000392004 ADAM11O75078 769 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 PRKACAP17612 351 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SPI1P17947 270 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SLC2A5P22732 501 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SDHAP31040 664 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 EXOSC2Q13868 293 aaKnown RBP9.16□□□□□ -0.94
COL6A3-205ENST00000392004 CLLU1Q5K131 121 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 FHL5Q5TD97 284 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 CD276Q5ZPR3 534 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SLC43A2Q8N370 569 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 HAS2Q92819 552 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 CNTNAP3BQ96NU0 1288 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 FOXB1Q99853 325 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 CNTNAP3Q9BZ76 1288 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SLCO5A1Q9H2Y9 848 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SLC7A11Q9UPY5 501 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 IGLV3-12A0A075B6K2 115 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 PRSS37A4D1T9 235 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 LRRTM2O43300 516 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 CTLA4P16410 223 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 ELK1P19419 428 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 LCN1P31025 176 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SCRN3Q0VDG4 424 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SLC22A6Q4U2R8 563 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 MTFR2Q6P444 385 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 OR5AK2Q8NH90 309 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 RNASE11Q8TAA1 199 aaKnown RBP9.16□□□□□ -0.94
COL6A3-205ENST00000392004 RBPMSQ93062 196 aaKnown RBP9.16□□□□□ -0.94
COL6A3-205ENST00000392004 CACNG6Q9BXT2 260 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SIGLEC7Q9Y286 467 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 MTORP42345 2549 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 ABCA12Q86UK0 2595 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SMAD9O15198 467 aaKnown RBP9.16□□□□□ -0.94
COL6A3-205ENST00000392004 FADS1O60427 444 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF205O95201 554 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 CDKN2AP42771 156 aaKnown RBP9.16□□□□□ -0.94
COL6A3-205ENST00000392004 PITPNBP48739 271 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 CLDN12P56749 244 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 LTC4SQ16873 150 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 SERPINA12Q8IW75 414 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 GTPBP8Q8N3Z3 284 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-205ENST00000392004 OR4Q3Q8NH05 313 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 MFSD8Q8NHS3 518 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 TXNIPQ9H3M7 391 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 PCDHB10Q9UN67 800 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 RASD1Q9Y272 281 aa9.16□□□□□ -0.94
COL6A3-205ENST00000392004 OR6C68A6NDL8 312 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 TM4SF5O14894 197 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 PAHP00439 452 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 SUMO3P55854 103 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-205ENST00000392004 C4orf46Q504U0 113 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 HES5Q5TA89 166 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 TSPO2Q5TGU0 170 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 C5orf46Q6UWT4 87 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 MOB3CQ70IA8 216 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 SYT9Q86SS6 491 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 ATG4DQ86TL0 474 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-205ENST00000392004 LRRC28Q86X40 367 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-205ENST00000392004 PIGTQ969N2 578 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 TIMP4Q99727 224 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 ANGPTL4Q9BY76 406 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 FGF20Q9NP95 211 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-205ENST00000392004 SLC22A13Q9Y226 551 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 LRRK1Q38SD2 2015 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 HSPA12AO43301 675 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 MTRF1O75570 445 aaKnown RBP9.15□□□□□ -0.94
COL6A3-205ENST00000392004 NEURL1O76050 574 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 H2AFB2P0C5Z0 115 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 APEHP13798 732 aaKnown RBP9.15□□□□□ -0.94
COL6A3-205ENST00000392004 SLC6A1P30531 599 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 RBM34P42696 430 aaKnown RBP9.15□□□□□ -0.94
COL6A3-205ENST00000392004 GABRA2P47869 451 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 BTN1A1Q13410 526 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 PGAP1Q75T13 922 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 ACBD4Q8NC06 268 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 LHFPL5Q8TAF8 219 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 OBSL1O75147 1896 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 DSPP15924 2871 aaKnown RBP9.15□□□□□ -0.94
COL6A3-205ENST00000392004 TOXO94900 526 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 KDM4BO94953 1096 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 MSR1P21757 451 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 NUP62P37198 522 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-205ENST00000392004 ACTC1P68032 377 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 ACTA1P68133 377 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 HSD17B12Q53GQ0 312 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 TMEM65Q6PI78 240 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 FTMTQ8N4E7 242 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 OR2AE1Q8NHA4 323 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 C11orf40Q8WZ69 217 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 GSX2Q9BZM3 304 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 COPZ2Q9P299 210 aa9.15□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF292O60281 2723 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 LIPT2A6NK58 231 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 BET1O15155 118 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF208O43345 1280 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 ZG16O60844 167 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms