RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 ST3GAL4Q11206 333 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 CBX3Q13185 183 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 C1DQ13901 141 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 PON3Q15166 354 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 KLHL12Q53G59 568 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 PHYHD1Q5SRE7 291 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 PDSS1Q5T2R2 415 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 EEF1A1P5Q5VTE0 462 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 OTPQ5XKR4 325 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 CARD17Q5XLA6 110 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 WDR73Q6P4I2 378 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 ZNF773Q6PK81 442 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 IGSF10Q6WRI0 2623 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 B3GNT6Q6ZMB0 384 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 AHSA2Q719I0 299 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 TUBA1AQ71U36 451 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 BTN2A1Q7KYR7 527 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 FCRLAQ7L513 359 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 SHFQ7M4L6 423 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 UEVLDQ8IX04 471 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 TUSC5Q8IXB3 177 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 SYT14Q8NB59 555 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 ZNF540Q8NDQ6 660 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 OR4F15Q8NGB8 312 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 OR52L2PQ8NGH6 319 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 OR52I1Q8NGK6 324 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 OR5M9Q8NGP3 310 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 OR6X1Q8NH79 312 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 ABHD3Q8WU67 409 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 GIMAP1Q8WWP7 306 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 CPNE4Q96A23 557 aaPredicted RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 SNRNP40Q96DI7 357 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 ZMYND19Q96E35 227 aaPredicted RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 ZHX1-C8orf76Q96EF9 292 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 PGAM5Q96HS1 289 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 GPR137Q96N19 417 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 ZNF649Q9BS31 505 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 COPS4Q9BT78 406 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 SF3B5Q9BWJ5 86 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 PRRG3Q9BZD7 231 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 NDEL1Q9GZM8 345 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 NUAK2Q9H093 628 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 SYT4Q9H2B2 425 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 TIGARQ9NQ88 270 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 RPRD1BQ9NQG5 326 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 AURKAIP1Q9NWT8 199 aaPredicted RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 SCN3BQ9NY72 215 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 TAS2R16Q9NYV7 291 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 B9D1Q9UPM9 204 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 EXOGQ9Y2C4 368 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 KCNK7Q9Y2U2 307 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 TPRKBQ9Y3C4 175 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 RPL36Q9Y3U8 105 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 RP1L1Q8IWN7 2480 aaPredicted RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 PHF3Q92576 2039 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 MED12LQ86YW9 2145 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 IGKV3D-15A0A087WSY6 115 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 IGLV1-36A0A0B4J1U3 117 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 EFCAB10A6NFE3 127 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 TVP23AA6NH52 213 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 VWC2LB2RUY7 222 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 AP4M1O00189 453 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 XKRYO14609 159 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 SLC16A7O60669 478 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 PFDN1O60925 122 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 GLCEO94923 617 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 SCAF4O95104 1147 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 VAMP5O95183 116 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 MPZL1O95297 269 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 SYNGR4O95473 234 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 TFAP2AP05549 437 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 CDK1P06493 297 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 ADH4P08319 380 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 PGA4P0DJD7 388 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 PGA3P0DJD8 388 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 PSKH1P11801 424 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 PIPP12273 146 aaPredicted RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 PCMT1P22061 227 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 EEF1B2P24534 225 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 PTGS2P35354 604 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 DAP3P51398 398 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 TDGF1P3P51864 188 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 HCCSP53701 268 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 GABARAPL2P60520 117 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 RPS7P62081 194 aaKnown RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 LY6DQ14210 128 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 HIST3H3Q16695 136 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 SLC25A47Q6Q0C1 308 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 ADCK1Q86TW2 530 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 TMEM200AQ86VY9 491 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 CROCCP3Q8IVE0 287 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 TMEM123Q8N131 208 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 FAM110DQ8TAY7 271 aaPredicted RBP3.11□□□□□ -1.91
MCF2-202ENST00000370573 RNF128Q8TEB7 428 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 FAR1Q8WVX9 515 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 TMEM54Q969K7 222 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 FOXN4Q96NZ1 517 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 OR2M2Q96R28 347 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 SNX18Q96RF0 628 aa3.11□□□□□ -1.91
MCF2-202ENST00000370573 ATP6V0BQ99437 205 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms