RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 MOKQ9UQ07 419 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 BAIAP2Q9UQB8 552 aa2.01□□□□□ -2.09
VPS54-202ENST00000354504 OTOGLQ3ZCN5 2332 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SMIM30A4D0T7 59 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TRABD2BA6NFA1 517 aa2□□□□□ -2.09
VPS54-202ENST00000354504 FAM90A7PA6NKC0 464 aa2□□□□□ -2.09
VPS54-202ENST00000354504 AQP7P3A6NL99 342 aa2□□□□□ -2.09
VPS54-202ENST00000354504 FAM90A22PA8MWA6 464 aa2□□□□□ -2.09
VPS54-202ENST00000354504 FAM90A12PA8MX19 464 aa2□□□□□ -2.09
VPS54-202ENST00000354504 FAM90A23PA8MXZ1 464 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SMAD9O15198 467 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 SYNGR3O43761 229 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ORC5O43913 435 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RAD51DO75771 328 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CEACAM4O75871 244 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TPPPO94811 219 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR2A4O95047 310 aa2□□□□□ -2.09
VPS54-202ENST00000354504 NDUFB2O95178 105 aa2□□□□□ -2.09
VPS54-202ENST00000354504 IGLV2-14P01704 120 aa2□□□□□ -2.09
VPS54-202ENST00000354504 MRPL3P09001 348 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 SULT1A3P0DMM9 295 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SULT1A4P0DMN0 295 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CCL3P10147 92 aa2□□□□□ -2.09
VPS54-202ENST00000354504 PTHLHP12272 177 aa2□□□□□ -2.09
VPS54-202ENST00000354504 GABRA1P14867 456 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SRMP19623 302 aa2□□□□□ -2.09
VPS54-202ENST00000354504 DCTDP32321 178 aa2□□□□□ -2.09
VPS54-202ENST00000354504 HOXD12P35452 270 aa2□□□□□ -2.09
VPS54-202ENST00000354504 LHX2P50458 406 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RGS8P57771 180 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 RPL15P61313 204 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 VAMP2P63027 116 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SIRPAP78324 504 aa2□□□□□ -2.09
VPS54-202ENST00000354504 FOXI1Q12951 378 aa2□□□□□ -2.09
VPS54-202ENST00000354504 EIF4EBP1Q13541 118 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 SLC17A1Q14916 467 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SF3B4Q15427 424 aaKnown RBP eCLIP2□□□□□ -2.096e-10■■■■■ 33.6
VPS54-202ENST00000354504 SNAPC1Q16533 368 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ACKR1Q16570 336 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TP53I3Q53FA7 332 aa2□□□□□ -2.09
VPS54-202ENST00000354504 PLAC9Q5JTB6 97 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CCBE1Q6UXH8 406 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 RHOUQ7L0Q8 258 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SLC16A14Q7RTX9 510 aa2□□□□□ -2.09
VPS54-202ENST00000354504 DND1Q8IYX4 353 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 NAXEQ8NCW5 288 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR51A2Q8NGJ7 313 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR2G2Q8NGZ5 317 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR51A7Q8NH64 312 aa2□□□□□ -2.09
VPS54-202ENST00000354504 MFSD8Q8NHS3 518 aa2□□□□□ -2.09
VPS54-202ENST00000354504 MCFD2Q8NI22 146 aa2□□□□□ -2.09
VPS54-202ENST00000354504 M1APQ8TC57 530 aa2□□□□□ -2.09
VPS54-202ENST00000354504 C2CD4CQ8TF44 421 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SLC7A6Q92536 515 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SNAPC3Q92966 411 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TMEM203Q969S6 136 aa2□□□□□ -2.09
VPS54-202ENST00000354504 C8orf49Q96NF6 230 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR2A7Q96R45 310 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ALG12Q9BV10 488 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SCRT1Q9BWW7 348 aa2□□□□□ -2.09
VPS54-202ENST00000354504 MMP28Q9H239 520 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RERGLQ9H628 205 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SYNDIG1Q9H7V2 258 aa2□□□□□ -2.09
VPS54-202ENST00000354504 NIPAL2Q9H841 368 aa2□□□□□ -2.09
VPS54-202ENST00000354504 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2□□□□□ -2.091e-6■■■■□ 24.6
VPS54-202ENST00000354504 ZNF391Q9UJN7 358 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SPATA2Q9UM82 520 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CFL2Q9Y281 166 aa2□□□□□ -2.09
VPS54-202ENST00000354504 LRP12Q9Y561 859 aa2□□□□□ -2.09
VPS54-202ENST00000354504 WIF1Q9Y5W5 379 aa2□□□□□ -2.09
VPS54-202ENST00000354504 DNAJC13O75165 2243 aa2□□□□□ -2.09
VPS54-202ENST00000354504 FRAS1Q86XX4 4008 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TRAV36DV7A0A075B6V5 113 aa2□□□□□ -2.09
VPS54-202ENST00000354504 IGKV3D-15A0A087WSY6 115 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TRAV14DV4A0A0A6YYC5 116 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR6C6A6NF89 314 aa2□□□□□ -2.09
VPS54-202ENST00000354504 URADA6NGE7 173 aa2□□□□□ -2.09
VPS54-202ENST00000354504 IFITM5A6NNB3 132 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TMEM14DPA8MWL7 114 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ZNF879B4DU55 563 aa2□□□□□ -2.09
VPS54-202ENST00000354504 AIPO00170 330 aa2□□□□□ -2.09
VPS54-202ENST00000354504 KPNA4O00629 521 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 HCN1O60741 890 aa2□□□□□ -2.09
VPS54-202ENST00000354504 PMS2P2O95744 297 aa2□□□□□ -2.09
VPS54-202ENST00000354504 PLGP00747 810 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 RAB40ALP0C0E4 278 aa2□□□□□ -2.09
VPS54-202ENST00000354504 LIFP15018 202 aa2□□□□□ -2.09
VPS54-202ENST00000354504 POU1F1P28069 291 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RBMS1P29558 406 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 PYCR1P32322 319 aa2□□□□□ -2.09
VPS54-202ENST00000354504 THBS4P35443 961 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CXCL12P48061 93 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ANXA11P50995 505 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 BLKP51451 505 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TMEM50BP56557 158 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CLDN18P56856 261 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RPL27P61353 136 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 SRSF6Q13247 344 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 SNTA1Q13424 505 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CAMK2DQ13557 499 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms