RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CDK5Q00535 292 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 CLVS2Q5SYC1 327 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 STPG1Q5TH74 334 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 OR1F12Q8NHA8 337 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 TSPAN32Q96QS1 320 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 SPACA1Q9HBV2 294 aa13.39□□□□□ -0.27
COL17A1-201ENST00000353479 EXOSC3Q9NQT5 275 aaKnown RBP13.39□□□□□ -0.27
COL17A1-201ENST00000353479 A0A1B0GVG6 124 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 PNLIPP16233 465 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 BMP5P22003 454 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 SSTR2P30874 369 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 RNLSQ5VYX0 342 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 RGS7BPQ6MZT1 257 aaPredicted RBP13.38□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF546Q86UE3 836 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 TMEM52Q8NDY8 209 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 OR10J5Q8NHC4 309 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 MSI2Q96DH6 328 aaKnown RBP13.38□□□□□ -0.27
COL17A1-201ENST00000353479 SLCO1B1Q9Y6L6 691 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 OR5H15A6NDH6 313 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 CYB5BO43169 146 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 HEXAP06865 529 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 FAHP16930 419 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 ISXQ2M1V0 245 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 OR4A16Q8NH70 328 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 S100PBPQ96BU1 408 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 CACNA1CQ13936 2221 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 HOXA1P49639 335 aaPredicted RBP13.38□□□□□ -0.27
COL17A1-201ENST00000353479 SARGQ9BW04 601 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 APOC3P02656 99 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 S100A2P29034 98 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 GALNSP34059 522 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 SNCAP37840 140 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.38□□□□□ -0.27
COL17A1-201ENST00000353479 OR51S1Q8NGJ8 323 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 MOGAT1Q96PD6 335 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 TMEM235A6NFC5 223 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 NFYAP23511 347 aaPredicted RBP13.38□□□□□ -0.27
COL17A1-201ENST00000353479 IL3RAP26951 378 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 HES1Q14469 280 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 SLC25A26Q70HW3 274 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 SLC25A45Q8N413 288 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 OR52I2Q8NH67 350 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 PRELID3BQ9Y3B1 194 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 A3GALT2U3KPV4 340 aa13.38□□□□□ -0.27
COL17A1-201ENST00000353479 KIR2DS1A0A191URI9 304 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 TPT1P13693 172 aaKnown RBP13.37□□□□□ -0.27
COL17A1-201ENST00000353479 KIR2DS4P43632 304 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 CCR9P51686 369 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 KIR2DS1Q14954 304 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 BCL2A1Q16548 175 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 TAF9Q16594 264 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 C2orf76Q3KRA6 126 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 OR10K2Q6IF99 312 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 HEPHL1Q6MZM0 1159 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 DPPA2Q7Z7J5 298 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 LSRQ86X29 649 aaPredicted RBP13.37□□□□□ -0.27
COL17A1-201ENST00000353479 PRSS35Q8N3Z0 413 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 OR8B4Q96RC9 309 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 UGT2A1Q9Y4X1 527 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 MIA3Q5JRA6 1907 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 CABIN1Q9Y6J0 2220 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 TCRBV16S1A1N1A0A5B0 115 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 FAM221AA4D161 298 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 AGPAT2O15120 278 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 OMGP23515 440 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 ACSM1Q08AH1 577 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 TFAP2EQ6VUC0 442 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 C20orf85Q9H1P6 137 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 RANGRFQ9HD47 186 aaPredicted RBP13.37□□□□□ -0.27
COL17A1-201ENST00000353479 NUP214P35658 2090 aaPredicted RBP13.37□□□□□ -0.27
COL17A1-201ENST00000353479 OR6C68A6NDL8 312 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 IFITM5A6NNB3 132 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 SLC25A1P53007 311 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 RAP2BP61225 183 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 FUT7Q11130 342 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 APOBEC3DQ96AK3 386 aaPredicted RBP13.37□□□□□ -0.27
COL17A1-201ENST00000353479 UPRTQ96BW1 309 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 UBL7Q96S82 380 aaPredicted RBP13.37□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF355PQ9NSJ1 428 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF136P52737 540 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 APOBEC4Q8WW27 367 aaKnown RBP13.37□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF501Q96CX3 271 aaPredicted RBP13.37□□□□□ -0.27
COL17A1-201ENST00000353479 NMNAT2Q9BZQ4 307 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 GCM1Q9NP62 436 aa13.37□□□□□ -0.27
COL17A1-201ENST00000353479 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.37□□□□□ -0.27
COL17A1-201ENST00000353479 CSF3P09919 207 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 SP9P0CG40 484 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 CD79BP40259 229 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 TPBGQ13641 420 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 CELF2-AS1Q8N7Q2 184 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 MCHR2Q969V1 340 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 GABARAPH6UMI1 98 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 PLPP3O14495 311 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 RER1O15258 196 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 NXPH3O95157 252 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 FUCA1P04066 466 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 FAM27D1Q5T7N8 215 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 ZAR1Q86SH2 424 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 PILRBQ9UKJ0 227 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 IGKV1-8A0A0C4DH67 115 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms