RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TMPRSS7Q7RTY8 843 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 DPY19L4Q7Z388 723 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 FAM220AQ7Z4H9 259 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 DNAAF1Q8NEP3 725 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 OR52I2Q8NH67 350 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 OR14L1PQ8NHC6 308 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 OTOSQ8NHW6 89 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 THEM6Q8WUY1 208 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 PNPLA2Q96AD5 504 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 ELMOD3Q96FG2 381 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 REG4Q9BYZ8 158 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 IFT46Q9NQC8 304 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 DEPPQ9NTK1 212 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 PIPOXQ9P0Z9 390 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 ZNF69Q9UC07 566 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 CLEC4AQ9UMR7 237 aa11.4□□□□□ -0.58
CLK3-201ENST00000345005 LRRC3CA6NJW4 275 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 HSPB2A8KAH6 182 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 NEURL1O76050 574 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 VAMP5O95183 116 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 CSF1P09603 554 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 ZNF43P17038 809 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 ALOX5APP20292 161 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 NOVA1P51513 510 aaKnown RBP11.39□□□□□ -0.59
CLK3-201ENST00000345005 RRADP55042 308 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 B3GALT5-AS1P59052 145 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 RPS11P62280 158 aaKnown RBP eCLIP11.39□□□□□ -0.59
CLK3-201ENST00000345005 H3F3AP84243 136 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 RBMS2Q15434 407 aaKnown RBP11.39□□□□□ -0.59
CLK3-201ENST00000345005 TGIF1Q15583 401 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 HSPB2Q16082 182 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 THEM4Q5T1C6 240 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 RPTNQ6XPR3 784 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 Q6ZTK2 550 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 PRSS45Q7RTY3 260 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 PDZD9Q8IXQ8 264 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 ASB17Q8WXJ9 295 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 DNTTIP1Q9H147 329 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 FOXJ3Q9UPW0 622 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 ABCD4O14678 606 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 DNPH1O43598 174 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 GMDSO60547 372 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 TRAPPC6AO75865 159 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 RBBP9O75884 186 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 TOXO94900 526 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 F10P00742 488 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 GDF1P27539 372 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 HOXA1P49639 335 aaPredicted RBP11.39□□□□□ -0.59
CLK3-201ENST00000345005 GPR85P60893 370 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 FOXO1Q12778 655 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 ZNF273Q14593 569 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 OR1C1Q15619 314 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 STK11Q15831 433 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 ETFDHQ16134 617 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 RNASE12Q5GAN4 147 aaKnown RBP11.39□□□□□ -0.59
CLK3-201ENST00000345005 SLC18B1Q6NT16 456 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 CHMP1BQ7LBR1 199 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 KRT77Q7Z794 578 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 YRDCQ86U90 279 aaKnown RBP11.39□□□□□ -0.59
CLK3-201ENST00000345005 GALNT16Q8N428 558 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 ZNF454Q8N9F8 522 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.39□□□□□ -0.59
CLK3-201ENST00000345005 OR2M7Q8NG81 312 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 OR6X1Q8NH79 312 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 SLC25A44Q96H78 314 aaPredicted RBP11.39□□□□□ -0.59
CLK3-201ENST00000345005 OR14A2Q96R54 314 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 MRPL13Q9BYD1 178 aaKnown RBP11.39□□□□□ -0.59
CLK3-201ENST00000345005 SLC25A32Q9H2D1 315 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 TCF7L1Q9HCS4 588 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 NOX4Q9NPH5 578 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 KLHL13Q9P2N7 655 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 UPB1Q9UBR1 384 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 COA3Q9Y2R0 106 aaPredicted RBP11.39□□□□□ -0.59
CLK3-201ENST00000345005 KLHDC2Q9Y2U9 406 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 PRELID3BQ9Y3B1 194 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 KCNMB2Q9Y691 235 aa11.39□□□□□ -0.59
CLK3-201ENST00000345005 LINC01387J3KSC0 135 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 TSPAN4O14817 238 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 TLX3O43711 291 aaPredicted RBP11.38□□□□□ -0.59
CLK3-201ENST00000345005 TRAF3IP2O43734 574 aaPredicted RBP11.38□□□□□ -0.59
CLK3-201ENST00000345005 SCO1O75880 301 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 GPANK1O95872 356 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 IGHG1P01857 330 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 RFPL3SP0C7P2 107 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 ZNF823P16415 610 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 AGTR1P30556 359 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 PTH2RP49190 550 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 SOX8P57073 446 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 CLRN1P58418 232 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 ADAM8P78325 824 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 GK2Q14410 553 aaPredicted RBP11.38□□□□□ -0.59
CLK3-201ENST00000345005 HLXQ14774 488 aaPredicted RBP11.38□□□□□ -0.59
CLK3-201ENST00000345005 LINC00696Q6ZRV3 163 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 TMUB2Q71RG4 321 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 FCRLAQ7L513 359 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 GLB1L2Q8IW92 636 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 SYNPRQ8TBG9 265 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 CCDC107Q8WV48 283 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 MS4A3Q96HJ5 214 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 SIGLEC12Q96PQ1 595 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms