RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TEX46H3BTG2 121 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 TNFSF11O14788 317 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 TPOP07202 933 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 TMEM81Q6P7N7 255 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 CDH24Q86UP0 819 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 UBALD2Q8IYN6 164 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 ELMOD2Q8IZ81 293 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 OXGR1Q96P68 337 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 SORCS2Q96PQ0 1159 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 GPER1Q99527 375 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF416Q9BWM5 594 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 HPF1Q9NWY4 346 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 TAS2R8Q9NYW2 309 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 PCSK5Q92824 1860 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 MEGF11A6BM72 1044 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 WIPF3A6NGB9 483 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF736B4DX44 427 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-201ENST00000341247 M0R233 179 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 SLC22A5O76082 557 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 LPLP06858 475 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 HCKP08631 526 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 FGF5P12034 268 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 CX3CR1P49238 355 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 UNC119Q13432 240 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 PCK2Q16822 640 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 TMPPEQ6ZT21 453 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 FJX1Q86VR8 437 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 RPS19BP1Q86WX3 136 aaKnown RBP9.16□□□□□ -0.94
LIMA1-201ENST00000341247 BPIFB2Q8N4F0 458 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 NAXEQ8NCW5 288 aa9.16□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF837Q96EG3 531 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-201ENST00000341247 NBEAQ8NFP9 2946 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 A0A1W2PNV4 684 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 OR2M5A3KFT3 312 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 OR5H15A6NDH6 313 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF878C9JN71 531 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 MPIG6BO95866 241 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 CXCL2P19875 107 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 FSTP19883 344 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 RAB3AP20336 220 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF93P35789 620 aaPredicted RBP9.15□□□□□ -0.94
LIMA1-201ENST00000341247 LRRC37A5PQ49AS3 106 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 SFRP5Q5T4F7 317 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF813Q6ZN06 617 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 TRAPPC6BQ86SZ2 158 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 PAQR4Q8N4S7 273 aaPredicted RBP9.15□□□□□ -0.94
LIMA1-201ENST00000341247 OR6S1Q8NH40 331 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 TMEM41AQ96HV5 264 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 SLC6A7Q99884 636 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 TTC28Q96AY4 2481 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 POM121CA8CG34 1229 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 L7N2F9 121 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 CCSO14618 274 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 ISG15P05161 165 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 VSIG8P0DPA2 414 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 GUCA1AP43080 201 aaPredicted RBP9.15□□□□□ -0.94
LIMA1-201ENST00000341247 OR3A4PP47883 348 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 STARP49675 285 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 SSR4P51571 173 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 TAS2R19P59542 299 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 ACTBP60709 375 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 ACTG1P63261 375 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 IL11RAQ14626 422 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 ZNF584Q8IVC4 421 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 TMEM104Q8NE00 496 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 OR5D14Q8NGL3 314 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 SLC26A1Q9H2B4 701 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 ATMQ13315 3056 aa9.15□□□□□ -0.94
LIMA1-201ENST00000341247 METTL21EPA6NDL7 271 aa9.15□□□□□ -0.95
LIMA1-201ENST00000341247 NPIPA2E9PIF3 369 aa9.15□□□□□ -0.95
LIMA1-201ENST00000341247 NPIPA3F8WFD2 350 aa9.15□□□□□ -0.95
LIMA1-201ENST00000341247 ZNHIT1O43257 154 aa9.15□□□□□ -0.95
LIMA1-201ENST00000341247 DBHP09172 617 aa9.15□□□□□ -0.95
LIMA1-201ENST00000341247 OR3A3P47888 321 aa9.15□□□□□ -0.95
LIMA1-201ENST00000341247 CSNK1A1P48729 337 aa9.15□□□□□ -0.95
LIMA1-201ENST00000341247 GLIPR1L1Q6UWM5 242 aa9.15□□□□□ -0.95
LIMA1-201ENST00000341247 PLXDC2Q6UX71 529 aa9.15□□□□□ -0.95
LIMA1-201ENST00000341247 SLC36A1Q7Z2H8 476 aa9.15□□□□□ -0.95
LIMA1-201ENST00000341247 ZNF230Q9UIE0 474 aaPredicted RBP9.15□□□□□ -0.95
LIMA1-201ENST00000341247 A0A1B0GTI1 187 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 TMEM82A0PJX8 343 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 AQP7P3A6NL99 342 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 RAB27BO00194 218 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 TMEM127O75204 238 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 TRAPPC6AO75865 159 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 DKK1O94907 266 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 POU3F2P20265 443 aaPredicted RBP9.14□□□□□ -0.95
LIMA1-201ENST00000341247 RFC3P40938 356 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 CXADRP78310 365 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 SLC25A47Q6Q0C1 308 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 OPN5Q6U736 354 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 OR10K1Q8NGX5 313 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 IMMP1LQ96LU5 166 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 C1QTNF6Q9BXI9 259 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 COL27A1Q8IZC6 1860 aaPredicted RBP9.14□□□□□ -0.95
LIMA1-201ENST00000341247 FAM25EA8MYX2 175 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 PATE4P0C8F1 98 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 GABRA1P14867 456 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 FOLR3P41439 243 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 SCAND1P57086 179 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms