RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 CELA2AP08217 269 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 BLVRBP30043 206 aaPredicted RBP10.71□□□□□ -0.7
USP1-201ENST00000339950 OR2B8PP59922 312 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 UBE2IP63279 158 aaKnown RBP10.71□□□□□ -0.7
USP1-201ENST00000339950 INSM1Q01101 510 aaPredicted RBP10.71□□□□□ -0.7
USP1-201ENST00000339950 CHRFAM7AQ494W8 412 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 LINC01590Q5TEZ4 76 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 PLXDC2Q6UX71 529 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 BHLHE23Q8NDY6 225 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 OR10G3Q8NGC4 313 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 OR4D6Q8NGJ1 314 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 MFSD8Q8NHS3 518 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 GPR137Q96N19 417 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 RGCCQ9H4X1 137 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 ZNF160Q9HCG1 818 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 GPR84Q9NQS5 396 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 OBP2AQ9NY56 170 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 TAS2R5Q9NYW4 299 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 PCDHGA1Q9Y5H4 931 aa10.71□□□□□ -0.7
USP1-201ENST00000339950 REV3LO60673 3130 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 LOC105371267A0A1B0GV96 52 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 MCRIP1C9JLW8 97 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 MTRF1O75570 445 aaKnown RBP10.7□□□□□ -0.7
USP1-201ENST00000339950 LCATP04180 440 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 SMIM10L1P0DMW3 83 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 CRABP1P29762 137 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 POLR2HP52434 150 aaKnown RBP10.7□□□□□ -0.7
USP1-201ENST00000339950 SLC37A1P57057 533 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 PDZK1IP1Q13113 114 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 SP6Q3SY56 376 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 C11orf40Q8WZ69 217 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 SLAMF6Q96DU3 332 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 SMIM10Q96HG1 83 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 UBL7Q96S82 380 aaPredicted RBP10.7□□□□□ -0.7
USP1-201ENST00000339950 GFI1Q99684 422 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 NKX6-2Q9C056 277 aaPredicted RBP10.7□□□□□ -0.7
USP1-201ENST00000339950 PLXNB3Q9ULL4 1909 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 CADP27708 2225 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 SPTBN5Q9NRC6 3674 aaKnown RBP10.7□□□□□ -0.7
USP1-201ENST00000339950 STMND1H3BQB6 276 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 PNLIPP16233 465 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 BDKRB2P30411 391 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 HSF1Q00613 529 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 SLC16A13Q7RTY0 426 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 UBALD1Q8TB05 177 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 OR8B4Q96RC9 309 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 SLC22A11Q9NSA0 550 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 PTRH2Q9Y3E5 179 aaKnown RBP10.7□□□□□ -0.7
USP1-201ENST00000339950 FRYLO94915 3013 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 ARPC3O15145 178 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 NDUFB6O95139 128 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 BCKDHBP21953 392 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 TLE1Q04724 770 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 RAB30Q15771 203 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 HACD4Q5VWC8 232 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 RTL10Q7L3V2 364 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 NAA40Q86UY6 237 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 C9orf40Q8IXQ3 194 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 STPG2Q8N412 459 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 ST7LQ8TDW4 575 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 PRRG4Q9BZD6 226 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 TAS2R8Q9NYW2 309 aa10.7□□□□□ -0.7
USP1-201ENST00000339950 COL4A4P53420 1690 aaPredicted RBP10.69□□□□□ -0.7
USP1-201ENST00000339950 NPIPA2E9PIF3 369 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 NPIPA3F8WFD2 350 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 XRCC3O43542 346 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 OR2T1O43869 369 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 ZNF354AO60765 605 aaPredicted RBP10.69□□□□□ -0.7
USP1-201ENST00000339950 UPK3AO75631 287 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 FCGR2AP12318 317 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 TUBG1P23258 451 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 DHRS2Q13268 280 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 SKP2Q13309 424 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 PPP1R1AQ13522 171 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 ELAVL1Q15717 326 aaKnown RBP10.69□□□□□ -0.7
USP1-201ENST00000339950 PHLDA2Q53GA4 152 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 CLLU1Q5K131 121 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 ZNF529Q6P280 563 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 SVBPQ8N300 66 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 OR5H2Q8NGV7 314 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 OR2AE1Q8NHA4 323 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 FLVCR1-AS1Q8TAF5 88 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 ELP5Q8TE02 316 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 GDF15Q99988 308 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 TGIF2Q9GZN2 237 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 CNTD2Q9H8S5 307 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 MRPS28Q9Y2Q9 187 aaKnown RBP10.69□□□□□ -0.7
USP1-201ENST00000339950 IGKV1D-43A0A0B4J1Z2 117 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 OR6C65A6NJZ3 312 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 PRSS44E7EML9 344 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 DBHP09172 617 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 SERPINF1P36955 418 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 NKAIN1Q4KMZ8 207 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 ABCA11PQ4W5N1 156 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 TMEM65Q6PI78 240 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 CPEB2Q7Z5Q1 589 aaKnown RBP10.69□□□□□ -0.7
USP1-201ENST00000339950 PXKQ7Z7A4 578 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 PNLDC1Q8NA58 520 aaKnown RBP10.69□□□□□ -0.7
USP1-201ENST00000339950 FAM71CQ8NEG0 241 aa10.69□□□□□ -0.7
USP1-201ENST00000339950 ZNF764Q96H86 408 aaPredicted RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms