RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SLC25A35Q3KQZ1 300 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 ZNF774Q6NX45 483 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 FAM214BQ7L5A3 538 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 BBS1Q8NFJ9 593 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 H7C2Y5 167 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 CTSBP07858 339 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 EPHA1P21709 976 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 APEX1P27695 318 aaKnown RBP9.05□□□□□ -0.96
USP54-201ENST00000339859 PTH2RP49190 550 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 GLYATL3Q5SZD4 288 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 EIF5AL1Q6IS14 154 aaKnown RBP9.05□□□□□ -0.96
USP54-201ENST00000339859 BTNL3Q6UXE8 466 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 OR10X1Q8NGY0 326 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 FAM3DQ96BQ1 224 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 ZG16BQ96DA0 208 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 NICN1Q9BSH3 213 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 ELOVL5Q9NYP7 299 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 RDH8Q9NYR8 311 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 ICAM5Q9UMF0 924 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 PRELID3BQ9Y3B1 194 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 MYOFQ9NZM1 2061 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 SIRPB1O00241 398 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 HAAOP46952 286 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 SIGLEC11Q96RL6 698 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 ISYNA1Q9NPH2 558 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 NECAP2Q9NVZ3 263 aa9.05□□□□□ -0.96
USP54-201ENST00000339859 M0R233 179 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 IGKV1D-16P01601 117 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 CD300LDQ6UXZ3 194 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 S100A7AQ86SG5 101 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 SNX18Q96RF0 628 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 KIR2DS1A0A191URI9 304 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 INMT-MINDY4F8WBC2 141 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 ZNF701M0R085 212 aaPredicted RBP9.04□□□□□ -0.96
USP54-201ENST00000339859 TUSC2O75896 110 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 CRYBA1P05813 215 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 CHRM2P08172 466 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 PCSK6P29122 969 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 KIR2DS4P43632 304 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 LSM6P62312 80 aaKnown RBP9.04□□□□□ -0.96
USP54-201ENST00000339859 FMODQ06828 376 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 KIR2DS1Q14954 304 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 BCL2A1Q16548 175 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 MRPL14Q6P1L8 145 aaKnown RBP9.04□□□□□ -0.96
USP54-201ENST00000339859 PLPP7Q8NBV4 271 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 MSI2Q96DH6 328 aaKnown RBP9.04□□□□□ -0.96
USP54-201ENST00000339859 FZR1Q9UM11 496 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 LRP12Q9Y561 859 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 GREB1Q4ZG55 1949 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 BORCS7-ASMTA0A0B4J1R7 106 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 SULT1B1O43704 296 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 FADS1O60427 444 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 ECI1P42126 302 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 ETV1P50549 477 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 FGL1Q08830 312 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 AADACL3Q5VUY0 350 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 SFXN4Q6P4A7 337 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 CMBLQ96DG6 245 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 C7orf34Q96L11 122 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 OR8B4Q96RC9 309 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 UBL7Q96S82 380 aaPredicted RBP9.04□□□□□ -0.96
USP54-201ENST00000339859 ABCG5Q9H222 651 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 HPGDSO60760 199 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 CTXN2P0C2S0 81 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 GNG3P63215 75 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 C12orf73Q69YU5 71 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 PP6455Q8WZ26 134 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 AIFM2Q9BRQ8 373 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 OPN3Q9H1Y3 402 aaPredicted RBP9.04□□□□□ -0.96
USP54-201ENST00000339859 NOX3Q9HBY0 568 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 PLCXD1Q9NUJ7 323 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 CRHP06850 196 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 ZNF26P17031 533 aaPredicted RBP9.04□□□□□ -0.96
USP54-201ENST00000339859 HNF1AP20823 631 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 TNK1Q13470 666 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 ZNF239Q16600 458 aaKnown RBP9.04□□□□□ -0.96
USP54-201ENST00000339859 MICBQ29980 383 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 DMBX1Q8NFW5 382 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 RNF128Q8TEB7 428 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 OR2B2Q9GZK3 357 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 KIAA1456Q9P272 454 aa9.04□□□□□ -0.96
USP54-201ENST00000339859 PRSS44E7EML9 344 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 HLA-HP01893 362 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 GSTP1P09211 210 aaKnown RBP9.03□□□□□ -0.96
USP54-201ENST00000339859 GPM6AP51674 278 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 CDK5Q00535 292 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 TMEM81Q6P7N7 255 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 CREB3L2Q70SY1 520 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 SYT9Q86SS6 491 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 PTP4A1Q93096 173 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 TXNL4BQ9NX01 149 aaKnown RBP9.03□□□□□ -0.96
USP54-201ENST00000339859 ONECUT1Q9UBC0 465 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 FXYD6-FXYD2A0A087WZ82 144 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 C4orf51C9J302 202 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 SHC1P29353 583 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 ZP4Q12836 540 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 CAMK2BQ13554 666 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 TBR1Q16650 682 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 C9orf152Q5JTZ5 239 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 TFAP2EQ6VUC0 442 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms