RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ADAP2Q9NPF8 381 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 GPATCH2LQ9NWQ4 482 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 CLN8Q9UBY8 286 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 GNPTGQ9UJJ9 305 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 HEBP2Q9Y5Z4 205 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 USP9XQ93008 2570 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 ZFHX2Q9C0A1 2572 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 ASH1LQ9NR48 2969 aaKnown RBP2.12□□□□□ -2.07
HMGB1-201ENST00000326004 MROH7-TTC4A0A0A0MT08 1334 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 CDHR2Q9BYE9 1310 aa2.12□□□□□ -2.07
HMGB1-201ENST00000326004 LRRC37A2A6NM11 1700 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 NCOR1O75376 2440 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 ANKRD50Q9ULJ7 1429 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 IGLV3-22A0A075B6J6 115 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 KCNE1BA0A087WTH5 132 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 TRBV9A0A0B4J1U6 114 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 KIR2DL5BA0A0G2JN68 375 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 KIR2DL5BA0A0G2JPC4 375 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 A0A0J9YYE9 177 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 A0A1W2PPV4 95 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 SIRPB1O00241 398 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 XKRYO14609 159 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 AIM2O14862 343 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 BCKDKO14874 412 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 NVLO15381 856 aaKnown RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 HUS1O60921 280 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 ERLIN2O94905 339 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 SNAI1O95863 264 aaPredicted RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 TRBC1P01850 177 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 MBP02144 154 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 IGKV3-11P04433 115 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 CSF3P09919 207 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 UBTFL6P0CB48 400 aaPredicted RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 UBCP0CG48 685 aaKnown RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 STAG3L2P0CL84 134 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 SMIM10L1P0DMW3 83 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 IGHV3-43DP0DP04 118 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 EIF2S2P20042 333 aaKnown RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 PTNP21246 168 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 HOXA9P31269 272 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 SLC1A2P43004 574 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 MRPL19P49406 292 aaKnown RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 MNAT1P51948 309 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 SUB1P53999 127 aaKnown RBP eCLIP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 LRRC63Q05C16 580 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 SMARCB1Q12824 385 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 TRDNQ13061 729 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 XKR4Q5GH76 650 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 SOHLH1Q5JUK2 328 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 PPM1LQ5SGD2 360 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 LCN12Q6JVE5 192 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 TMEM135Q86UB9 458 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 KIR2DL5AQ8N109 375 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 ZADH2Q8N4Q0 377 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF557Q8N988 423 aaPredicted RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 C8orf31Q8N9H6 132 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 DRAXINQ8NBI3 349 aaPredicted RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 FBXL13Q8NEE6 735 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 PROKR2Q8NFJ6 384 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 OR1S2Q8NGQ3 325 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 KIR2DL5BQ8NHK3 375 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 TMEM158Q8WZ71 300 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 EXOSC8Q96B26 276 aaKnown RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 ASB9Q96DX5 294 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 CCDC126Q96EE4 140 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 CERS2Q96G23 380 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 SMIM10Q96HG1 83 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 HSFY1Q96LI6 401 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 SH3GL1Q99961 368 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 HDHD3Q9BSH5 251 aaPredicted RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 TMEM59Q9BXS4 323 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 LZTFL1Q9NQ48 299 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 CTPS2Q9NRF8 586 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 AGPAT3Q9NRZ7 376 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 DEC1Q9P2X7 70 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 PCYOX1Q9UHG3 505 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 LSM7Q9UK45 103 aaKnown RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 TPRP12270 2363 aaKnown RBP2.11□□□□□ -2.07
HMGB1-201ENST00000326004 CACNA1SQ13698 1873 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 MAP3K15Q6ZN16 1313 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 PCDH11XQ9BZA7 1347 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 ACACBO00763 2458 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 ANKRD26Q9UPS8 1709 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 NCOR2Q9Y618 2525 aa2.11□□□□□ -2.07
HMGB1-201ENST00000326004 NUP155O75694 1391 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 FLT4P35916 1363 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 ADGRB1O14514 1584 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 C5orf42Q9H799 3197 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 KIF1BO60333 1816 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 MAP1BP46821 2468 aaKnown RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 PTPRZ1P23471 2315 aaPredicted RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 IGLV4-69A0A075B6H9 119 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 A0A1B0GUH1 482 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 SERPINE3A8MV23 424 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF879B4DU55 563 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 TMX2-CTNND1H3BSU7 103 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CCL21O00585 134 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 NDUFAB1O14561 156 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 PPP1R2P9O14990 202 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 MAGEB4O15481 346 aaPredicted RBP2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms