RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 OLFM2O95897 454 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 SPP1P10451 314 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 PRPH2P23942 346 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 HRH1P35367 487 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 GTF2H5Q6ZYL4 71 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 EXD3Q8N9H8 876 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 DMBX1Q8NFW5 382 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 LHX4Q969G2 390 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 MRGPRX1Q96LB2 322 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 BCO1Q9HAY6 547 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 TTC3P53804 2025 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 AP4M1O00189 453 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 NXPH3O95157 252 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 POU3F2P20265 443 aaPredicted RBP10.45□□□□□ -0.74
VPS39-201ENST00000318006 GDF1P27539 372 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 BSGP35613 385 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 HTR5AP47898 357 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 C17orf67Q0P5P2 114 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 CDONQ4KMG0 1287 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 ZNF787Q6DD87 383 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 OR8G2PQ6IF36 304 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 PATE1Q8WXA2 126 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 RPUSD4Q96CM3 377 aaKnown RBP10.45□□□□□ -0.74
VPS39-201ENST00000318006 PISDQ9UG56 409 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 NTNG1Q9Y2I2 539 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 H0Y8G0 127 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 MT-ATP6P00846 226 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 NTF3P20783 257 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 SLC6A1P30531 599 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 PTGER4P35408 488 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 BIDP55957 195 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 PPP2CBP62714 309 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 PPP2CAP67775 309 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 ARHGAP11BQ3KRB8 267 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 TMEM176BQ3YBM2 270 aaPredicted RBP10.45□□□□□ -0.74
VPS39-201ENST00000318006 ZNF628Q5EBL2 1059 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 SDF2Q99470 211 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 PRO1933Q9H354 126 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 PLEKHF2Q9H8W4 249 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 PLRG1O43660 514 aaKnown RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 CD1CP29017 333 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 FOXK1P85037 733 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 ZNF85Q03923 595 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 Q3ZCU0 254 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 AGBL4Q5VU57 503 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 OR4C5Q8NGB2 326 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 OR4F5Q8NH21 305 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 PIGTQ969N2 578 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 OR4F4Q96R69 305 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 UBL7Q96S82 380 aaPredicted RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 CCNL2Q96S94 520 aaPredicted RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 PHF7Q9BWX1 381 aaPredicted RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 RAB27BO00194 218 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 CEACAM5P06731 702 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 ICAM2P13598 275 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 PI3P19957 117 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 NPBWR1P48145 328 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 EGR3Q06889 387 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 TMEM196Q5HYL7 178 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 FAM24BQ8N5W8 94 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 SLC35A4Q96G79 324 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 FAM103A1Q9BTL3 118 aaKnown RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 SHROOM3Q8TF72 1996 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 CST4P01036 141 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 C1QAP02745 245 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 ATF1P18846 271 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 HNRNPA3P51991 378 aaKnown RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 RPL27P61353 136 aaKnown RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 ZNF528Q3MIS6 628 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 EMC4Q5J8M3 183 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 LRRC18Q8N456 261 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 OR51A2Q8NGJ7 313 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 TEX101Q9BY14 249 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 SLC35D1Q9NTN3 355 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 MYOTQ9UBF9 498 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 DNAJB11Q9UBS4 358 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 A8MVM7 634 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 MPPED1O15442 326 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 TUSC2O75896 110 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 OR1D5P58170 312 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 TPPP2P59282 170 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 GGNBP1Q5YKI7 109 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 B3GNTL1Q67FW5 361 aaPredicted RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 DOK3Q7L591 496 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 OR2A1Q8NGT9 310 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 CCL4L1Q8NHW4 92 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 BAHD1Q8TBE0 780 aaPredicted RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 STT3BQ8TCJ2 826 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 ZC3HAV1LQ96H79 300 aaKnown RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 CXorf58Q96LI9 332 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 COA3Q9Y2R0 106 aaPredicted RBP10.44□□□□□ -0.74
VPS39-201ENST00000318006 PPIL1Q9Y3C6 166 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 MMP24Q9Y5R2 645 aa10.44□□□□□ -0.74
VPS39-201ENST00000318006 ARID1BQ8NFD5 2236 aaPredicted RBP10.43□□□□□ -0.74
VPS39-201ENST00000318006 A0A1B0GX78 115 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 SEC14L6B5MCN3 397 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 SDCBPO00560 298 aaPredicted RBP10.43□□□□□ -0.74
VPS39-201ENST00000318006 PRSS23O95084 383 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 CCR5P51681 352 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 DUSP8Q13202 625 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms