RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 IQCF6A8MYZ5 107 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 H0YL77 283 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 MLNRO43193 412 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 ZNF3P17036 446 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 PRKACGP22612 351 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 FMO3P31513 532 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 GRK5P34947 590 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 SLC6A9P48067 706 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 ENTPD1P49961 510 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 SLC3A1Q07837 685 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 GK2Q14410 553 aaPredicted RBP13.77□□□□□ -0.21
LSM1-201ENST00000311351 LINC01590Q5TEZ4 76 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 ZNF283Q8N7M2 679 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 ATG16L2Q8NAA4 619 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 OR8G5Q8NG78 346 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 SLCO4A1Q96BD0 722 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 OTULINQ96BN8 352 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 RAB39BQ96DA2 213 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 TMEM106BQ9NUM4 274 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 UBAP1Q9NZ09 502 aa13.77□□□□□ -0.21
LSM1-201ENST00000311351 RNF212BA8MTL3 300 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 TNFRSF1AP19438 455 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 POU1F1P28069 291 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 SRP14P37108 136 aaKnown RBP13.76□□□□□ -0.21
LSM1-201ENST00000311351 MMP16P51512 607 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 TPTEP56180 551 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 BNIP1Q12981 228 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 SNAI3Q3KNW1 292 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 ACSM5Q6NUN0 579 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 SPATC1Q76KD6 591 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 OR2AE1Q8NHA4 323 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 SLAMF6Q96DU3 332 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 ZNF582Q96NG8 517 aaPredicted RBP13.76□□□□□ -0.21
LSM1-201ENST00000311351 SIGLEC11Q96RL6 698 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 COPS4Q9BT78 406 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 IL19Q9UHD0 177 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 NPTNQ9Y639 398 aa13.76□□□□□ -0.21
LSM1-201ENST00000311351 F5H5P2 479 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 SURF4O15260 269 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 GSC2O15499 205 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 PLPP2O43688 288 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 IGHV2-70P01814 119 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 SLC2A1P11166 492 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 OTX1P32242 354 aaPredicted RBP13.75□□□□□ -0.21
LSM1-201ENST00000311351 MALLQ13021 153 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 PCK2Q16822 640 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 SLC27A4Q6P1M0 643 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 PEG10Q86TG7 708 aaKnown RBP13.75□□□□□ -0.21
LSM1-201ENST00000311351 PAPD5Q8NDF8 572 aaKnown RBP13.75□□□□□ -0.21
LSM1-201ENST00000311351 OR6N2Q8NGY6 317 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 ZNF420Q8TAQ5 688 aaPredicted RBP13.75□□□□□ -0.21
LSM1-201ENST00000311351 ST7LQ8TDW4 575 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 SPTSSAQ969W0 71 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 MEGF10Q96KG7 1140 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 SLC30A2Q9BRI3 323 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 CENPMQ9NSP4 180 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 DNAJB9Q9UBS3 223 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 PPP1R3CQ9UQK1 317 aa13.75□□□□□ -0.21
LSM1-201ENST00000311351 TRAV20A0A0B4J274 112 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 ZNF593O00488 134 aaPredicted RBP13.74□□□□□ -0.21
LSM1-201ENST00000311351 TIPRLO75663 272 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 HLA-DPB1P04440 258 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 SBK2P0C263 348 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 OSMP13725 252 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 SELEP16581 610 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 PCMT1P22061 227 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 PRKXP51817 358 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 GINS1Q14691 196 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 PGAP1Q75T13 922 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 MRPL21Q7Z2W9 205 aaKnown RBP13.74□□□□□ -0.21
LSM1-201ENST00000311351 ERI1Q8IV48 349 aaKnown RBP13.74□□□□□ -0.21
LSM1-201ENST00000311351 PHC2Q8IXK0 858 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 OR13G1Q8NGZ3 307 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 YY1AP1Q9H869 796 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 ZNF556Q9HAH1 456 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 NTN4Q9HB63 628 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 GCM1Q9NP62 436 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 G6PC2Q9NQR9 355 aa13.74□□□□□ -0.21
LSM1-201ENST00000311351 ZNF878C9JN71 531 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 PNPP00491 289 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 BTG1P62324 171 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 LCN2P80188 198 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 ZNF92Q03936 586 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 EIF2B1Q14232 305 aaKnown RBP13.73□□□□□ -0.21
LSM1-201ENST00000311351 ZMYND11Q15326 602 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 TAF13Q15543 124 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 KRTAP24-1Q3LI83 254 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 TEX30Q5JUR7 227 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 GLYATL3Q5SZD4 288 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 FAHD2BQ6P2I3 314 aaPredicted RBP13.73□□□□□ -0.21
LSM1-201ENST00000311351 PLBD1Q6P4A8 553 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 DRAM2Q6UX65 266 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 DPY19L4Q7Z388 723 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 MOGAT3Q86VF5 341 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 ZMYND19Q96E35 227 aaPredicted RBP13.73□□□□□ -0.21
LSM1-201ENST00000311351 FAHD2AQ96GK7 314 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 INTS14Q96SY0 518 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 AMELYQ99218 206 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 OR51V1Q9H2C8 321 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 TMEM100Q9NV29 134 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms