RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 KIR2DS2P43631 304 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 FUT2Q10981 343 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 ANKRD16Q6P6B7 361 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 CAMKMTQ7Z624 323 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 MDGA1Q8NFP4 955 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 MYOZ3Q8TDC0 251 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 LMX1BO60663 402 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 CXCL12P48061 93 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 ARFGAP1Q8N6T3 406 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 OR52L2PQ8NGH6 319 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 TRPM6Q9BX84 2022 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 SLC35B4Q969S0 331 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 ZNF768Q9H5H4 540 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 USP22Q9UPT9 525 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 SNRPGP15A8MWD9 76 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 FCN1O00602 326 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 SLC25A5P05141 298 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 PIGPP57054 158 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 RELBQ01201 579 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 C18orf21Q32NC0 220 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 VMA21Q3ZAQ7 101 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 PLA1AQ53H76 456 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 HSD17B13Q7Z5P4 300 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 CLEC14AQ86T13 490 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 BHLHE23Q8NDY6 225 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 TAAR9Q96RI9 348 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 TAAR2Q9P1P5 351 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 ANXA10Q9UJ72 324 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 TCFL5Q9UL49 500 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 GPR45Q9Y5Y3 372 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 RGS13O14921 159 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 SLC6A12P48065 614 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 YPEL5P62699 121 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 ZNF385BQ569K4 471 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 WASHC3Q9Y3C0 194 aa12.74□□□□□ -0.37
CCDC88A-201ENST00000263630 MED1Q15648 1581 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 XRCC2O43543 280 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 LRP3O75074 770 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 EGR3Q06889 387 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 ACY3Q96HD9 319 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 C12orf42Q96LP6 360 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 XRN1Q8IZH2 1706 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 NRASP01111 189 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 HRASP01112 189 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 INHBCP55103 352 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 SEMA3BQ13214 749 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 IGFBP7Q16270 282 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 A4GALTQ9NPC4 353 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 G3V2L1 256 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 LINC00299Q6ZSB3 139 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 CD207Q9UJ71 328 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 EXOGQ9Y2C4 368 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 VAMP5O95183 116 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 TFAP2AP05549 437 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 IAPPP10997 89 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 HOXC5Q00444 222 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 FOXK2Q01167 660 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 ARRDC2Q8TBH0 407 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 MOGAT1Q96PD6 335 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 RNF39Q9H2S5 420 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 FLVCR2Q9UPI3 526 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 TIMM10BQ9Y5J6 103 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 A0A1W2PN81 502 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 RBP4P02753 201 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 CHRNA7P36544 502 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 TMED6Q8WW62 240 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 TMEM40Q8WWA1 233 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 MARCH5Q9NX47 278 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 IZUMO4Q1ZYL8 232 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 A0A1W2PNV4 684 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 TMEM127O75204 238 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 TBXA2RP21731 343 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 B2MP61769 119 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 CARFQ8N187 725 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 GLIS1Q8NBF1 620 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 LRRC15Q8TF66 581 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 MBD3L1Q8WWY6 194 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 CSF3RQ99062 836 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 MMP26Q9NRE1 261 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 SLC45A2Q9UMX9 530 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 SLC5A2P31639 672 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 PRLHRP49683 370 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 MED25Q71SY5 747 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 OR5AS1Q8N127 324 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 PCNPQ8WW12 178 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 C3orf30Q96M34 536 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 TMEM231Q9H6L2 316 aa12.73□□□□□ -0.37
CCDC88A-201ENST00000263630 NID2Q14112 1375 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 SFTPA2Q8IWL1 248 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 SFTPA1Q8IWL2 248 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 FAM131CQ96AQ9 280 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 ZNF541Q9H0D2 1346 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 NID1P14543 1247 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 OPRK1P41145 380 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 C11orf91Q3C1V1 193 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 C2orf50Q96LR7 162 aa12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 NXF2Q9GZY0 626 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 SRP9P49458 86 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-201ENST00000263630 GP2P55259 537 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms