RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SPTY2D1-AS1A0A0U1RR47 76 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 MDFIC2A0A1B0GVS7 189 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 C4orf47A7E2U8 309 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 LGALS8O00214 317 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 IL5P05113 134 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 NFYBP25208 207 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 CD80P33681 288 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 MAGEB1P43366 347 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 HOXA1P49639 335 aaPredicted RBP9.74□□□□□ -0.85
CD44-201ENST00000263398 PCBP3P57721 371 aaKnown RBP9.74□□□□□ -0.85
CD44-201ENST00000263398 SNRPNP63162 240 aaKnown RBP9.74□□□□□ -0.85
CD44-201ENST00000263398 ZNF92Q03936 586 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 SSX1Q16384 188 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 TAF9Q16594 264 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 LINC00303Q3SY05 128 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 GLCCI1Q86VQ1 547 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 APH1BQ8WW43 257 aa9.74□□□□□ -0.85
CD44-201ENST00000263398 GNPNAT1Q96EK6 184 aaPredicted RBP9.74□□□□□ -0.85
CD44-201ENST00000263398 BTBD17A6NE02 478 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 EFSO43281 561 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 PLPP2O43688 288 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 GLULP15104 373 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 GLB1P16278 677 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 HRH1P35367 487 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 YBX1P67809 324 aaKnown RBP9.73□□□□□ -0.85
CD44-201ENST00000263398 PXDC1Q5TGL8 231 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 DND1Q8IYX4 353 aaKnown RBP9.73□□□□□ -0.85
CD44-201ENST00000263398 GALNT16Q8N428 558 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 ARHGEF39Q8N4T4 335 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 MARCH1Q8TCQ1 289 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 C8orf44Q96CB5 159 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 C14orf79Q96F83 325 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 PLK3Q9H4B4 646 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 HDGFL3Q9Y3E1 203 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 CABIN1Q9Y6J0 2220 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 ATP6V1G2-DDX39BF2Z307 99 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 OR5H8P0DN80 308 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 RPA2P15927 270 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 ATF1P18846 271 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 FCGR2CP31995 323 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 OPRM1P35372 400 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 C21orf58P58505 322 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 NLRC3Q7RTR2 1065 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 LYG2Q86SG7 212 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 KIAA1958Q8N8K9 716 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 ZFP92A6NM28 416 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 GLAP06280 429 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 TPOP07202 933 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 PI3P19957 117 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 PCMT1P22061 227 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 RPL12P30050 165 aaKnown RBP9.73□□□□□ -0.85
CD44-201ENST00000263398 SLC25A1P53007 311 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 EDDM3BP56851 147 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 ZNF85Q03923 595 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 RBPJQ06330 500 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 CLN3Q13286 438 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 CCDC71Q8IV32 467 aaPredicted RBP9.73□□□□□ -0.85
CD44-201ENST00000263398 RELL2Q8NC24 303 aaPredicted RBP9.73□□□□□ -0.85
CD44-201ENST00000263398 OTOSQ8NHW6 89 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 FGF14Q92915 247 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 PELI1Q96FA3 418 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 WDR89Q96FK6 387 aaPredicted RBP9.73□□□□□ -0.85
CD44-201ENST00000263398 POLDIP2Q9Y2S7 368 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 LMO7DNF2Z398 122 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 HSD17B6O14756 317 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 DHHO43323 396 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 NRASP01111 189 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 OR13C7P0DN81 318 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 CBR1P16152 277 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 RAG2P55895 527 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 ZBTB37Q5TC79 503 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 DTWD2Q8NBA8 298 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 PPP1R1CQ8WVI7 109 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 MRGPRX3Q96LB0 322 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 RTL8AQ9BWD3 113 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 PARP12Q9H0J9 701 aaKnown RBP9.73□□□□□ -0.85
CD44-201ENST00000263398 MMP25Q9NPA2 562 aa9.73□□□□□ -0.85
CD44-201ENST00000263398 ZNF354AO60765 605 aaPredicted RBP9.72□□□□□ -0.85
CD44-201ENST00000263398 SCAF4O95104 1147 aaKnown RBP9.72□□□□□ -0.85
CD44-201ENST00000263398 HLA-DOBP13765 273 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 GNB3P16520 340 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 ADIRFQ15847 76 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 LAIR1Q6GTX8 287 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 OR4C3Q8NH37 302 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 LANCL2Q9NS86 450 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 SH3BGRL2Q9UJC5 107 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 GDF2Q9UK05 429 aaPredicted RBP9.72□□□□□ -0.85
CD44-201ENST00000263398 MRPS2Q9Y399 296 aaKnown RBP9.72□□□□□ -0.85
CD44-201ENST00000263398 ARFGEF1Q9Y6D6 1849 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 ZNF724A8MTY0 619 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 E5RGE8 158 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 GRPP07492 148 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 ZGLP1P0C6A0 271 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 SRFP11831 508 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 EDN3P14138 238 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 RNF4P78317 190 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 OR8G2PQ6IF36 304 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 LHFPL2Q6ZUX7 228 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 LINC01555Q8NAE3 123 aa9.72□□□□□ -0.85
CD44-201ENST00000263398 ZG16BQ96DA0 208 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms