RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 KPTNQ9Y664 436 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 UPK1AO00322 258 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 APOBEC3DQ96AK3 386 aaPredicted RBP17.35■□□□□ 0.37
UPF1-201ENST00000262803 PURGQ9UJV8 347 aaKnown RBP17.35■□□□□ 0.37
UPF1-201ENST00000262803 SLC5A6Q9Y289 635 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 PUS1Q9Y606 427 aaKnown RBP eCLIP17.35■□□□□ 0.37
UPF1-201ENST00000262803 TXNL1O43396 289 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 RPL11P62913 178 aaKnown RBP17.35■□□□□ 0.37
UPF1-201ENST00000262803 PNLIPRP3Q17RR3 467 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 ELFN2Q5R3F8 820 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 C16orf52Q8NHV5 167 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 RBPMSQ93062 196 aaKnown RBP17.35■□□□□ 0.37
UPF1-201ENST00000262803 REEP6Q96HR9 211 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 ZNF331Q9NQX6 463 aaPredicted RBP17.35■□□□□ 0.37
UPF1-201ENST00000262803 ASH2LQ9UBL3 628 aa17.35■□□□□ 0.37
UPF1-201ENST00000262803 ZNF816-ZNF321PA0A0X1KG74 233 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 DHHO43323 396 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 SNCGO76070 127 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 JTBO76095 146 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 OR2F2O95006 317 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 FLI1Q01543 452 aaPredicted RBP17.34■□□□□ 0.37
UPF1-201ENST00000262803 OR2F1Q13607 317 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 KCNAB1Q14722 419 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 TRAT1Q6PIZ9 186 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 OR2AK2Q8NG84 335 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 OR51E1Q8TCB6 317 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 EMC6Q9BV81 110 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 COMMD5Q9GZQ3 224 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 PLEKHA2Q9HB19 425 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 CXCL13O43927 109 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 PRR35P0CG20 571 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 THBS4P35443 961 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 RNF4P78317 190 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 B4GALNT1Q00973 533 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 ACOT6Q3I5F7 207 aaPredicted RBP17.34■□□□□ 0.37
UPF1-201ENST00000262803 GPX8Q8TED1 209 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 SLC39A7Q92504 469 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 ZNF225Q9UK10 706 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 RPL18Q07020 188 aaKnown RBP17.34■□□□□ 0.37
UPF1-201ENST00000262803 PCK2Q16822 640 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 RYDENQ9NUL5 291 aaKnown RBP17.34■□□□□ 0.37
UPF1-201ENST00000262803 C5orf49A4QMS7 147 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 C2CD4DB7Z1M9 353 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 AIPO00170 330 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 CTSLP07711 333 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 FUT6P51993 359 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 GNB2P62879 340 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 CLINT1Q14677 625 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 NKG7Q16617 165 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 KHDC1LQ5JSQ8 128 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 DBX2Q6ZNG2 339 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 OR52N5Q8NH56 324 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 SCARB1Q8WTV0 552 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 POFUT1Q9H488 388 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 CEACAM5P06731 702 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 FAM219BQ5XKK7 198 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 FBXL14Q8N1E6 418 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 OR2A1Q8NGT9 310 aa17.34■□□□□ 0.37
UPF1-201ENST00000262803 HS3ST1O14792 307 aa17.33■□□□□ 0.37
UPF1-201ENST00000262803 PHLDA2Q53GA4 152 aa17.33■□□□□ 0.37
UPF1-201ENST00000262803 GFRALQ6UXV0 394 aa17.33■□□□□ 0.37
UPF1-201ENST00000262803 MOB1BQ7L9L4 216 aa17.33■□□□□ 0.37
UPF1-201ENST00000262803 CCL4L1Q8NHW4 92 aa17.33■□□□□ 0.37
UPF1-201ENST00000262803 MAGEB4O15481 346 aaPredicted RBP17.33■□□□□ 0.36
UPF1-201ENST00000262803 EDN3P14138 238 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 EVX1P49640 407 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 OR5AS1Q8N127 324 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 GSX2Q9BZM3 304 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 RNF32Q9H0A6 362 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 HRO43593 1189 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 ZNF354AO60765 605 aaPredicted RBP17.33■□□□□ 0.36
UPF1-201ENST00000262803 NME1P15531 152 aaKnown RBP17.33■□□□□ 0.36
UPF1-201ENST00000262803 PPP1CAP62136 330 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 SOX7Q9BT81 388 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 AKIP1Q9NQ31 210 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 PCYT1BQ9Y5K3 369 aaPredicted RBP17.33■□□□□ 0.36
UPF1-201ENST00000262803 MEIKINA0A087WXM9 373 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 FBP1P09467 338 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 PPP2CBP62714 309 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 PPP2CAP67775 309 aa17.33■□□□□ 0.36
UPF1-201ENST00000262803 CNRIP1Q96F85 164 aaPredicted RBP17.33■□□□□ 0.36
UPF1-201ENST00000262803 ZNF705GA8MUZ8 300 aaPredicted RBP17.32■□□□□ 0.36
UPF1-201ENST00000262803 MGST1P10620 155 aaKnown RBP17.32■□□□□ 0.36
UPF1-201ENST00000262803 TMEM196Q5HYL7 178 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 TMUB2Q71RG4 321 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 CALHM3Q86XJ0 350 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 SPNS1Q9H2V7 528 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 BANF2Q9H503 90 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 S100A8P05109 93 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 VWA2Q5GFL6 755 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 HSD17B11Q8NBQ5 300 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 OR10P1Q8NGE3 313 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 OR13C5Q8NGS8 318 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 PP6455Q8WZ26 134 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 ACTR3CQ9C0K3 210 aaPredicted RBP17.32■□□□□ 0.36
UPF1-201ENST00000262803 PIGMQ9H3S5 423 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 BHLHE40O14503 412 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 ADAM10O14672 748 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 ARPC3O15145 178 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 TGM1P22735 817 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms