RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SAMD14Q8IZD0 417 aaPredicted RBP12.86□□□□□ -0.35
SDC1-201ENST00000254351 OR10H5Q8NGA6 315 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 METTL21AQ8WXB1 218 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 INTS12Q96CB8 462 aaKnown RBP12.86□□□□□ -0.35
SDC1-201ENST00000254351 TMEM100Q9NV29 134 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 SLC5A6Q9Y289 635 aa12.86□□□□□ -0.35
SDC1-201ENST00000254351 A0A1W2PQU0 124 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 SERINC4A6NH21 518 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 FOSL1P15407 271 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 HGFACQ04756 655 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 TOMM34Q15785 309 aaPredicted RBP12.85□□□□□ -0.35
SDC1-201ENST00000254351 MIDNQ504T8 468 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 DMRTC2Q8IXT2 367 aaPredicted RBP12.85□□□□□ -0.35
SDC1-201ENST00000254351 LILRB2Q8N423 598 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 OR5D18Q8NGL1 313 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 OTOSQ8NHW6 89 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 RPS4Y2Q8TD47 263 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 RNF128Q8TEB7 428 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 TAAR8Q969N4 342 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 ZNF587Q96SQ5 575 aaPredicted RBP12.85□□□□□ -0.35
SDC1-201ENST00000254351 MMP25Q9NPA2 562 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 COLEC10Q9Y6Z7 277 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 CHD9Q3L8U1 2897 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 GPR37O15354 613 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 GDI1P31150 447 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 EGR4Q05215 589 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 CCINQ13939 588 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 ANKRD55Q3KP44 614 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 TMEM240Q5SV17 173 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 LILRA6Q6PI73 481 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 LINC00114Q6XXX2 140 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 TMEM184AQ6ZMB5 413 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 IL34Q6ZMJ4 242 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 FAM160A2Q8N612 972 aaPredicted RBP12.85□□□□□ -0.35
SDC1-201ENST00000254351 EDAQ92838 391 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 SLAMF9Q96A28 289 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 RAB11FIP5Q9BXF6 653 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 GDF2Q9UK05 429 aaPredicted RBP12.85□□□□□ -0.35
SDC1-201ENST00000254351 PILRAQ9UKJ1 303 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 LRP12Q9Y561 859 aa12.85□□□□□ -0.35
SDC1-201ENST00000254351 LOC107986453A0A1B0GWG9 222 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 F8VVB4 439 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 F8VWA3 439 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 CYR61O00622 381 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 DUS4LO95620 317 aaKnown RBP12.84□□□□□ -0.35
SDC1-201ENST00000254351 ADH1CP00326 375 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 IFNA2P01563 188 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 SLC2A1P11166 492 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 KIAA0141Q14154 515 aaPredicted RBP12.84□□□□□ -0.35
SDC1-201ENST00000254351 PYY3Q5JQD4 70 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 C15orf54Q8N8G6 183 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 NPRL2Q8WTW4 380 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 EDEM2Q9BV94 578 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 SUCNR1Q9BXA5 334 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 TOLLIPQ9H0E2 274 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 YBX2Q9Y2T7 364 aaKnown RBP12.84□□□□□ -0.35
SDC1-201ENST00000254351 RFNGQ9Y644 331 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 URADA6NGE7 173 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 RAB27BO00194 218 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 SLC33A1O00400 549 aaPredicted RBP12.84□□□□□ -0.35
SDC1-201ENST00000254351 NKX2-2O95096 273 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 MT-ND4LP03901 98 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 CD63P08962 238 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 SELLP14151 372 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 PRF1P14222 555 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 CTLA4P16410 223 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 FMODQ06828 376 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 GFI1BQ5VTD9 330 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 ANKRD9Q96BM1 317 aaPredicted RBP12.84□□□□□ -0.35
SDC1-201ENST00000254351 BSCL2Q96G97 398 aaPredicted RBP12.84□□□□□ -0.35
SDC1-201ENST00000254351 TGM7Q96PF1 710 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 Q9N2J8 555 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 PTPRSQ13332 1948 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 MPIG6BO95866 241 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 JMJD7P0C870 316 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 S1PR1P21453 382 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 RNF212Q495C1 297 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 AGBL4Q5VU57 503 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 BCORP1Q8N888 145 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 GPR119Q8TDV5 335 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 OR8B4Q96RC9 309 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 ABHD6Q9BV23 337 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 TEX101Q9BY14 249 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 FOXQ1Q9C009 403 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 ZBP1Q9H171 429 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 SEBOXQ9HB31 216 aaPredicted RBP12.84□□□□□ -0.35
SDC1-201ENST00000254351 SLC2A8Q9NY64 477 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 FBXL21Q9UKT6 434 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 CELSR3Q9NYQ7 3312 aa12.84□□□□□ -0.35
SDC1-201ENST00000254351 UMAD1C9J7I0 102 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 TGFBR3LH3BV60 316 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 HEXAP06865 529 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 RNH1P13489 461 aaKnown RBP12.83□□□□□ -0.36
SDC1-201ENST00000254351 GLP1RP43220 463 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 ARRB1P49407 418 aaPredicted RBP12.83□□□□□ -0.36
SDC1-201ENST00000254351 RIDAP52758 137 aaKnown RBP12.83□□□□□ -0.36
SDC1-201ENST00000254351 MEF2DQ14814 521 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 C4orf17Q53FE4 359 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 AWAT2Q6E213 333 aa12.83□□□□□ -0.36
SDC1-201ENST00000254351 ZNF343Q6P1L6 599 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms