RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 DYRK1AQ13627 763 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 C9orf135Q5VTT2 229 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 COX15Q7KZN9 410 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 OR8H1Q8NGG4 311 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 RDH8Q9NYR8 311 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 HS3ST3B1Q9Y662 390 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 WBP4O75554 376 aaKnown RBP12.2□□□□□ -0.46
LDLR-201ENST00000252444 F10P00742 488 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 IGHA1P01876 353 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 SHC1P29353 583 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 UQCRC1P31930 480 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 GABRA2P47869 451 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 PTH2RP49190 550 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 OR8B8Q15620 311 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 NRN1LQ496H8 165 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 ZNF611Q8N823 705 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 OR51E1Q8TCB6 317 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 NPRL2Q8WTW4 380 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 POLE4Q9NR33 117 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 TMEM74BQ9NUR3 256 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 EHFQ9NZC4 300 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 FLRT3Q9NZU0 649 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 FXYD6-FXYD2A0A087WZ82 144 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 PDGFBP01127 241 aaPredicted RBP12.2□□□□□ -0.46
LDLR-201ENST00000252444 ZNF121P58317 390 aaPredicted RBP12.2□□□□□ -0.46
LDLR-201ENST00000252444 CXADRP78310 365 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 RIPPLY2Q5TAB7 128 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 STX12Q86Y82 276 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 PIAS4Q8N2W9 510 aaPredicted RBP12.2□□□□□ -0.46
LDLR-201ENST00000252444 BPIFB2Q8N4F0 458 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 NUDT8Q8WV74 236 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 SPSB2Q99619 263 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 FXYD6Q9H0Q3 95 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 CA10Q9NS85 328 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 SLC17A2O00624 439 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 KCNJ3P48549 501 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 IDH3GP51553 393 aaPredicted RBP12.2□□□□□ -0.46
LDLR-201ENST00000252444 RAP2BP61225 183 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 GABRA6Q16445 453 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 GLYATL3Q5SZD4 288 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 GPR155Q7Z3F1 870 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 CDC20BQ86Y33 519 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 RHOFQ9HBH0 211 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 KCNJ16Q9NPI9 418 aa12.2□□□□□ -0.46
LDLR-201ENST00000252444 ZNF107Q9UII5 783 aaPredicted RBP12.2□□□□□ -0.46
LDLR-201ENST00000252444 HMX3A6NHT5 357 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 B3GALNT1O75752 331 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 ACAA2P42765 397 aaKnown RBP12.19□□□□□ -0.46
LDLR-201ENST00000252444 SCGB2A2Q13296 93 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 VASH2Q86V25 355 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 ANGPTL5Q86XS5 388 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 C12orf45Q8N5I9 185 aaPredicted RBP12.19□□□□□ -0.46
LDLR-201ENST00000252444 SLC39A7Q92504 469 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 TMEM45BQ96B21 275 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 NARS2Q96I59 477 aaKnown RBP12.19□□□□□ -0.46
LDLR-201ENST00000252444 UNKLQ9H9P5 680 aaKnown RBP12.19□□□□□ -0.46
LDLR-201ENST00000252444 CRLF2Q9HC73 371 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 RBFOX1Q9NWB1 397 aaKnown RBP12.19□□□□□ -0.46
LDLR-201ENST00000252444 LRP12Q9Y561 859 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 H3BSH0 61 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 RAB1AP62820 205 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 PCK2Q16822 640 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 TEX30Q5JUR7 227 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 SLC22A25Q6T423 547 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 SLC30A7Q8NEW0 376 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 EDARADDQ8WWZ3 215 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 HGDQ93099 445 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 ST6GALNAC5Q9BVH7 336 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 CHIAQ9BZP6 476 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 SYNPO2LQ9H987 977 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 ADGRL4Q9HBW9 690 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 MYO9BQ13459 2157 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 VEGFCP49767 419 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 RPS18P62269 152 aaKnown RBP12.19□□□□□ -0.46
LDLR-201ENST00000252444 DHODHQ02127 395 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 POU4F3Q15319 338 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 CD226Q15762 336 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 AGAP6Q5VW22 663 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 GNRHR2Q96P88 292 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 TAS2R4Q9NYW5 299 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 FABP1P07148 127 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 CCL3P10147 92 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 ZNF136P52737 540 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 MRPL14Q6P1L8 145 aaKnown RBP12.19□□□□□ -0.46
LDLR-201ENST00000252444 OR5D13Q8NGL4 314 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 ST7LQ8TDW4 575 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 SMAP2Q8WU79 429 aaPredicted RBP12.19□□□□□ -0.46
LDLR-201ENST00000252444 HAS2Q92819 552 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 C4orf45Q96LM5 186 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 CXXC4Q9H2H0 198 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 FKBP14Q9NWM8 211 aa12.19□□□□□ -0.46
LDLR-201ENST00000252444 TRAV6A0A075B6T7 132 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 IFITM5A6NNB3 132 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 DNASE1P24855 282 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 UBE2MP61081 183 aaKnown RBP12.18□□□□□ -0.46
LDLR-201ENST00000252444 ASCL5Q7RTU5 278 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 SFXN3Q9BWM7 321 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 ELOVL5Q9NYP7 299 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 REV1Q9UBZ9 1251 aa12.18□□□□□ -0.46
LDLR-201ENST00000252444 A0A1B0GUH1 482 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms