RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 OTPQ5XKR4 325 aa16.39■□□□□ 0.21
CLN3-260ENST00000637578 GTF3AQ92664 365 aaKnown RBP16.39■□□□□ 0.21
CLN3-260ENST00000637578 ZNF275Q9NSD4 429 aaPredicted RBP16.39■□□□□ 0.21
CLN3-260ENST00000637578 CDC42EP3Q9UKI2 254 aa16.39■□□□□ 0.21
CLN3-260ENST00000637578 RRP15Q9Y3B9 282 aaKnown RBP16.39■□□□□ 0.21
CLN3-260ENST00000637578 LOC100289279A0A1B0GTE1 492 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 RER1O15258 196 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 SURF4O15260 269 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 GPANK1O95872 356 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 MT-ND5P03915 603 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 CRYBB2P43320 205 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 HTR5AP47898 357 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 SLC34A1Q06495 639 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 ZIK1Q3SY52 487 aaPredicted RBP16.38■□□□□ 0.21
CLN3-260ENST00000637578 SLX4IPQ5VYV7 408 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 FAM166AQ6J272 317 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 SLC26A10Q8NG04 563 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 OR1F12Q8NHA8 337 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 TEX12Q9BXU0 123 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 SRA1Q9HD15 236 aaKnown RBP16.38■□□□□ 0.21
CLN3-260ENST00000637578 PLEK2Q9NYT0 353 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 TVP23BQ9NYZ1 205 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 LHFPL6Q9Y693 200 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.38■□□□□ 0.217e-9■■□□□ 13.5
CLN3-260ENST00000637578 ABHD16AO95870 558 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 TFP02787 698 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 LIPAP38571 399 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 ZNF81P51508 661 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 GLO1Q04760 184 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 FAM209AQ5JX71 171 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 OGFRL1Q5TC84 451 aaPredicted RBP16.38■□□□□ 0.21
CLN3-260ENST00000637578 GALNT4Q8N4A0 578 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 OR9Q1Q8NGQ5 310 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 MBOAT4Q96T53 435 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 NMNAT2Q9BZQ4 307 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 TOR3AQ9H497 397 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 CYSLTR2Q9NS75 346 aa16.38■□□□□ 0.21
CLN3-260ENST00000637578 CGGBP1Q9UFW8 167 aaPredicted RBP16.38■□□□□ 0.21
CLN3-260ENST00000637578 FAM183AA6NL82 134 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 M0R129 80 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 IGHV1-46P01743 117 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 GPR6P46095 362 aaPredicted RBP16.37■□□□□ 0.21
CLN3-260ENST00000637578 PSG7Q13046 419 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 SNAPC1Q16533 368 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 MEP1BQ16820 701 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 C12orf73Q69YU5 71 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 GJC3Q8NFK1 279 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 SLC7A6Q92536 515 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 PLEKHA8Q96JA3 519 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 DCLRE1CQ96SD1 692 aaKnown RBP16.37■□□□□ 0.21
CLN3-260ENST00000637578 HCAR1Q9BXC0 346 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 MED20Q9H944 212 aa16.37■□□□□ 0.21
CLN3-260ENST00000637578 ZSCAN5BA6NJL1 495 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 J3QW42 95 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 TGFAP01135 160 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 GYPBP06028 91 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 PYCR1P32322 319 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 SLC25A1P53007 311 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 RIPK1Q13546 671 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 PACRGLQ8N7B6 248 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 OR2T4Q8NH00 348 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 POFUT1Q9H488 388 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 LPAR3Q9UBY5 353 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 KCNS2Q9ULS6 477 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 STARD10Q9Y365 291 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 GRIP1Q9Y3R0 1128 aa16.36■□□□□ 0.21
CLN3-260ENST00000637578 PLSCR5A0PG75 271 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 DLGAP1O14490 977 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 PRKYO43930 277 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 FAM157CP0CG43 387 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 CLUP10909 449 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 SPI1P17947 270 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 KITLGP21583 273 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 CENPAP49450 140 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 CDH15P55291 814 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 TEKQ02763 1124 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 RSPO1Q2MKA7 263 aaPredicted RBP16.35■□□□□ 0.21
CLN3-260ENST00000637578 KRTAP27-1Q3LI81 207 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 PLBD1Q6P4A8 553 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 PROKR2Q8NFJ6 384 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 OR51L1Q8NGJ5 315 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 ZNRF4Q8WWF5 429 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 NRG4Q8WWG1 115 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 PTP4A1Q93096 173 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 OTULINQ96BN8 352 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 COG8Q96MW5 612 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 COQ7Q99807 217 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 PRRG3Q9BZD7 231 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 HDHD2Q9H0R4 259 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 C8orf4Q9NR00 106 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 DECR2Q9NUI1 292 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 SMPD3Q9NY59 655 aaPredicted RBP16.35■□□□□ 0.21
CLN3-260ENST00000637578 ZDHHC8Q9ULC8 765 aa16.35■□□□□ 0.21
CLN3-260ENST00000637578 IGHV1-69-2A0A0G2JMI3 117 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 PRR23D1E9PI22 279 aaPredicted RBP16.34■□□□□ 0.21
CLN3-260ENST00000637578 E9PQ18 207 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 WNT9BO14905 357 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 ATP6V1G2O95670 118 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 CD55P08174 381 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 DBHP09172 617 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms