RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ZNF454Q8N9F8 522 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 OR10S1Q8NGN2 331 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 SYNPRQ8TBG9 265 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 SLC25A40Q8TBP6 338 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 THEM6Q8WUY1 208 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 CYGBQ8WWM9 190 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 IPCEF1Q8WWN9 437 aaPredicted RBP15.54■□□□□ 0.08
CLN3-239ENST00000628023 IGFBPL1Q8WX77 278 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 RFKQ969G6 155 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 DDX28Q9NUL7 540 aaKnown RBP15.54■□□□□ 0.08
CLN3-239ENST00000628023 TBCCD1Q9NVR7 557 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 FAM118AQ9NWS6 357 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 NKX1-2Q9UD57 310 aaPredicted RBP15.54■□□□□ 0.08
CLN3-239ENST00000628023 LAMP5Q9UJQ1 280 aa15.54■□□□□ 0.08
CLN3-239ENST00000628023 FBXO9Q9UK97 447 aaPredicted RBP15.54■□□□□ 0.08
CLN3-239ENST00000628023 M0R135 149 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 NGFP01138 241 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 HSD11B1P28845 292 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 NUDT6P53370 316 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 GGTLC2Q14390 218 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 NKPD1Q17RQ9 610 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 MSMPQ1L6U9 139 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 SWI5Q1ZZU3 235 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 ZNF718Q3SXZ3 478 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 CIARTQ8N365 385 aaPredicted RBP15.53■□□□□ 0.08
CLN3-239ENST00000628023 OTOSQ8NHW6 89 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 ST7LQ8TDW4 575 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 APOBEC3DQ96AK3 386 aaPredicted RBP15.53■□□□□ 0.08
CLN3-239ENST00000628023 ZNF799Q96GE5 643 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 COG8Q96MW5 612 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 ZNF582Q96NG8 517 aaPredicted RBP15.53■□□□□ 0.08
CLN3-239ENST00000628023 ABHD6Q9BV23 337 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 OR2J1Q9GZK6 312 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 YIPF3Q9GZM5 350 aa15.53■□□□□ 0.08
CLN3-239ENST00000628023 WARS2Q9UGM6 360 aaKnown RBP15.53■□□□□ 0.08
CLN3-239ENST00000628023 HIVEP2P31629 2446 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 M0R233 179 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 OVOL3O00110 214 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 ICMTO60725 284 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 ACSM4P0C7M7 580 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 PAX1P15863 534 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 HTR1FP30939 366 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 ATP6V1E1P36543 226 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 GRB2P62993 217 aaKnown RBP15.52■□□□□ 0.08
CLN3-239ENST00000628023 MST1LQ2TV78 715 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 LRP11Q86VZ4 500 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 OR51G2Q8NGK0 314 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 OR5L1Q8NGL2 311 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 SNX33Q8WV41 574 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 UBE2FQ969M7 185 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 KCNJ15Q99712 375 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 VRK1Q99986 396 aaPredicted RBP15.52■□□□□ 0.08
CLN3-239ENST00000628023 APOL4Q9BPW4 351 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 ZNF701Q9NV72 531 aaPredicted RBP15.52■□□□□ 0.08
CLN3-239ENST00000628023 GPR160Q9UJ42 338 aa15.52■□□□□ 0.08
CLN3-239ENST00000628023 TRIM64A6NGJ6 449 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 TRIM64BA6NI03 449 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 SNTNA6NMZ2 147 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 H3BSA7 217 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 J3QW42 95 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 SLC16A6O15403 523 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 MPZL2O60487 215 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 CLPTM1O96005 669 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 LCATP04180 440 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 ERCC1P07992 297 aaPredicted RBP15.51■□□□□ 0.07
CLN3-239ENST00000628023 H2BFMP0C1H6 154 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 ZNF250P15622 560 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 EVX1P49640 407 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 PRKXP51817 358 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 HCCSP53701 268 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 SNRPGP62308 76 aaKnown RBP15.51■□□□□ 0.07
CLN3-239ENST00000628023 POU4F2Q12837 409 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 ALKBH6Q3KRA9 238 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 KRTAP27-1Q3LI81 207 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 MEDAGQ5VYS4 303 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.51■□□□□ 0.07
CLN3-239ENST00000628023 SLC35F2Q8IXU6 374 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 ZNF283Q8N7M2 679 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 KLF14Q8TD94 323 aaPredicted RBP15.51■□□□□ 0.07
CLN3-239ENST00000628023 RNF133Q8WVZ7 376 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 AMELYQ99218 206 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 ADGRL4Q9HBW9 690 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 SLCO1C1Q9NYB5 712 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 PTTG3PQ9NZH4 202 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 TAAR3PQ9P1P4 343 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.51■□□□□ 0.07
CLN3-239ENST00000628023 KLHDC2Q9Y2U9 406 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 N6AMT1Q9Y5N5 214 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 TMEM14AQ9Y6G1 99 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 JMJD1CQ15652 2540 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 TLN2Q9Y4G6 2542 aa15.51■□□□□ 0.07
CLN3-239ENST00000628023 E9PQ18 207 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 H7C417 338 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 ENTPD6O75354 484 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 MT-ND5P03915 603 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 TUBG1P23258 451 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 MPV17P39210 176 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 ALDH3B1P43353 468 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 CX3CR1P49238 355 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 PPOXP50336 477 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms