RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TERTO14746 1132 aaKnown RBP9.72□□□□□ -0.85
UPF3A-212ENST00000619079 LY86O95711 162 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 PRNPP04156 253 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 FBXO45P0C2W1 286 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 CPMP14384 443 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 ACAA2P42765 397 aaKnown RBP9.72□□□□□ -0.85
UPF3A-212ENST00000619079 PLAURQ03405 335 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 TMEM215Q68D42 235 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 Q6ZRG5 221 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 ZNF565Q8N9K5 539 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 RNF128Q8TEB7 428 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 SSX3Q99909 188 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 SLC23A2Q9UGH3 650 aa9.72□□□□□ -0.85
UPF3A-212ENST00000619079 APOBEC3BQ9UH17 382 aaKnown RBP9.72□□□□□ -0.85
UPF3A-212ENST00000619079 MSGN1A6NI15 193 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 FAM171A2A8MVW0 826 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 K7EQS6 105 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 SPINT1O43278 529 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 TSPAN15O95858 294 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 F10P00742 488 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 GAPDHP04406 335 aaKnown RBP9.71□□□□□ -0.85
UPF3A-212ENST00000619079 FSTP19883 344 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 RAB6AP20340 208 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 WASP42768 502 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 TNFRSF4P43489 277 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 PKIAP61925 76 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 CCINQ13939 588 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 TMEM128Q5BJH2 165 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 GLYATL3Q5SZD4 288 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 FHL5Q5TD97 284 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 TMEM225Q6GV28 225 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 Q6ZS52 159 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 MDGA2Q7Z553 956 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 PRSS35Q8N3Z0 413 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 PNLDC1Q8NA58 520 aaKnown RBP9.71□□□□□ -0.85
UPF3A-212ENST00000619079 AQP3Q92482 292 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 RAB7BQ96AH8 199 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 LURAP1Q96LR2 239 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 IP6K3Q96PC2 410 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 BCO1Q9HAY6 547 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 FBXO34Q9NWN3 711 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 DNAJB12Q9NXW2 375 aaKnown RBP9.71□□□□□ -0.85
UPF3A-212ENST00000619079 DHDHQ9UQ10 334 aa9.71□□□□□ -0.85
UPF3A-212ENST00000619079 LOC100509620A0A075B734 347 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 TMEM235A6NFC5 223 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 SHISA7A6NL88 538 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 SEC14L6B5MCN3 397 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 PRICKLE3O43900 615 aaPredicted RBP9.71□□□□□ -0.86
UPF3A-212ENST00000619079 SCGNO76038 276 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 JTBO76095 146 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 IFI6P09912 130 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 ALOX5APP20292 161 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 CDKN2AP42771 156 aaKnown RBP9.71□□□□□ -0.86
UPF3A-212ENST00000619079 KIR3DL2P43630 455 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 COL9A2Q14055 689 aaPredicted RBP9.71□□□□□ -0.86
UPF3A-212ENST00000619079 TGIF1Q15583 401 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 TRMT12Q53H54 448 aaKnown RBP9.71□□□□□ -0.86
UPF3A-212ENST00000619079 WDR38Q5JTN6 314 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 ADAMTSL4Q6UY14 1074 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 TRAPPC6BQ86SZ2 158 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 LSRQ86X29 649 aaPredicted RBP9.71□□□□□ -0.86
UPF3A-212ENST00000619079 ARRDC1Q8N5I2 433 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 EXD3Q8N9H8 876 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 PLPP7Q8NBV4 271 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 OR4S1Q8NGB4 309 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 SNIP1Q8TAD8 396 aaKnown RBP9.71□□□□□ -0.86
UPF3A-212ENST00000619079 MAFIPQ8WZ33 124 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 MRGPRFQ96AM1 343 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 COX14Q96I36 57 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 NUDT9Q9BW91 350 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 ULBP3Q9BZM4 244 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 PRDM13Q9H4Q3 707 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 PDE7BQ9NP56 450 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 CUTCQ9NTM9 273 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 FAM86C1Q9NVL1 165 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 MEMO1Q9Y316 297 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 TMED3Q9Y3Q3 217 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 FLVCR1Q9Y5Y0 555 aa9.71□□□□□ -0.86
UPF3A-212ENST00000619079 A0A1B0GTH9 108 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 BCAT2O15382 392 aaPredicted RBP9.7□□□□□ -0.86
UPF3A-212ENST00000619079 GUSBP08236 651 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 OR8U9P0C7N5 309 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 CD37P11049 281 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 DDTP30046 118 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 LSSP48449 732 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 SRSF5Q13243 272 aaKnown RBP9.7□□□□□ -0.86
UPF3A-212ENST00000619079 EIF2B1Q14232 305 aaKnown RBP9.7□□□□□ -0.86
UPF3A-212ENST00000619079 KCNAB1Q14722 419 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 FJX1Q86VR8 437 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 KDM8Q8N371 416 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 ADAD2Q8NCV1 583 aaKnown RBP9.7□□□□□ -0.86
UPF3A-212ENST00000619079 OR2L3Q8NG85 312 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 OR6N2Q8NGY6 317 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 OR8U1Q8NH10 309 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 AKR7LQ8NHP1 331 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 ZNF563Q8TA94 476 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 LCN9Q8WX39 176 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 SPACA1Q9HBV2 294 aa9.7□□□□□ -0.86
UPF3A-212ENST00000619079 FAM212BQ9NTI7 297 aaPredicted RBP9.7□□□□□ -0.86
UPF3A-212ENST00000619079 NUP210LQ5VU65 1888 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms