RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 HPP00738 406 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 TMEM225BP0DP42 221 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 CPT2P23786 658 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 POLR2HP52434 150 aaKnown RBP11.32□□□□□ -0.6
LIG1-221ENST00000613670 ZNF117Q03924 483 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 TMEM240Q5SV17 173 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 ADAM5Q6NVV9 412 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 ADAMTS18Q8TE60 1221 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 RNF128Q8TEB7 428 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 TM4SF19Q96DZ7 209 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 SARGQ9BW04 601 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 ZNF275Q9NSD4 429 aaPredicted RBP11.32□□□□□ -0.6
LIG1-221ENST00000613670 MRPS18BQ9Y676 258 aaKnown RBP11.32□□□□□ -0.6
LIG1-221ENST00000613670 A8MXK9 166 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 WRBO00258 174 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 GP1BAP07359 652 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 BLVRBP30043 206 aaPredicted RBP11.32□□□□□ -0.6
LIG1-221ENST00000613670 PLEKHN1Q494U1 663 aaPredicted RBP11.32□□□□□ -0.6
LIG1-221ENST00000613670 FAM69BQ5VUD6 431 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 C16orf47Q6ZP98 133 aaPredicted RBP11.32□□□□□ -0.6
LIG1-221ENST00000613670 SLC36A1Q7Z2H8 476 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 ATG4DQ86TL0 474 aaPredicted RBP11.32□□□□□ -0.6
LIG1-221ENST00000613670 PUSL1Q8N0Z8 303 aaKnown RBP11.32□□□□□ -0.6
LIG1-221ENST00000613670 FNDC9Q8TBE3 224 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 NIT2Q9NQR4 276 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 CCDC163A0A0D9SF12 145 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 ZNF98A6NK75 572 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 K7EPK0 472 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 RD3LP0DJH9 198 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 PPICP45877 212 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 FAM71E2Q8N5Q1 922 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 OR52N4Q8NGI2 321 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 OR52H1Q8NGJ2 320 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 ASB5Q8WWX0 329 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 SLC25A28Q96A46 364 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 PPP4R1LQ9P1A2 415 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 NDRG3Q9UGV2 375 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 KCNIP3Q9Y2W7 256 aa11.32□□□□□ -0.6
LIG1-221ENST00000613670 A6NIZ1 184 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 SULT1C2O00338 296 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 APOC1P02654 83 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 CTHP32929 405 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 RGS19P49795 217 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 DAP3P51398 398 aaKnown RBP11.31□□□□□ -0.6
LIG1-221ENST00000613670 RAP1BP61224 184 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 RAP1AP62834 184 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 MGAT2Q10469 447 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 SPIN3Q5JUX0 258 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 OR1M1Q8NGA1 313 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 TCTN2Q96GX1 697 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 OR5B2Q96R09 309 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 C1orf198Q9H425 327 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 RPH3AQ9Y2J0 694 aaPredicted RBP11.31□□□□□ -0.6
LIG1-221ENST00000613670 MTCL1Q9Y4B5 1905 aaKnown RBP11.31□□□□□ -0.6
LIG1-221ENST00000613670 SHISA8B8ZZ34 492 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 LRP3O75074 770 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 KCNJ3P48549 501 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 SNU13P55769 128 aaKnown RBP11.31□□□□□ -0.6
LIG1-221ENST00000613670 INPP5JQ15735 1006 aaPredicted RBP11.31□□□□□ -0.6
LIG1-221ENST00000613670 ADAD2Q8NCV1 583 aaKnown RBP11.31□□□□□ -0.6
LIG1-221ENST00000613670 OR4D6Q8NGJ1 314 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 NUBPLQ8TB37 319 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 ZDHHC12Q96GR4 267 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 TXNIPQ9H3M7 391 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 CNTD2Q9H8S5 307 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 TAF9BQ9HBM6 251 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 KLF15Q9UIH9 416 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 R4GMQ9 66 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 BORCS7-ASMTA0A0B4J1R7 106 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 METTL12A8MUP2 240 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 TNFRSF10CO14798 259 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 LMX1BO60663 402 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 ABOP16442 354 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 YPEL5P62699 121 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 NKAIN3Q8N8D7 197 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 TCEAL3Q969E4 200 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 ZNF775Q96BV0 537 aaPredicted RBP11.31□□□□□ -0.6
LIG1-221ENST00000613670 ZNF285Q96NJ3 590 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 RHOFQ9HBH0 211 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 ZFP57Q9NU63 452 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 PLEKHJ1Q9NW61 149 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 VSIG4Q9Y279 399 aa11.31□□□□□ -0.6
LIG1-221ENST00000613670 COL4A4P53420 1690 aaPredicted RBP11.31□□□□□ -0.6
LIG1-221ENST00000613670 SSX5O60225 188 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 MTRF1O75570 445 aaKnown RBP11.3□□□□□ -0.6
LIG1-221ENST00000613670 NSA2O95478 260 aaKnown RBP11.3□□□□□ -0.6
LIG1-221ENST00000613670 OR8U9P0C7N5 309 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 SMIM10L1P0DMW3 83 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 SULF2Q8IWU5 870 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 SGPP2Q8IWX5 399 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 UEVLDQ8IX04 471 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 HSD17B11Q8NBQ5 300 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 SLAMF6Q96DU3 332 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 SMIM10Q96HG1 83 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 REG4Q9BYZ8 158 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 DZANK1Q9NVP4 752 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 GDF2Q9UK05 429 aaPredicted RBP11.3□□□□□ -0.6
LIG1-221ENST00000613670 FREM3P0C091 2139 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 IGKV1D-42A0A075B6H8 117 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 TRBV5-5A0A0J9YX44 114 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms