RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 LRP12Q9Y561 859 aa16.44■□□□□ 0.22
UPF1-210ENST00000600689 TMEM14AQ9Y6G1 99 aa16.44■□□□□ 0.22
UPF1-210ENST00000600689 MED19A0JLT2 244 aaPredicted RBP16.43■□□□□ 0.22
UPF1-210ENST00000600689 KRBOX4Q5JUW0 171 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 ATG4DQ86TL0 474 aaPredicted RBP16.43■□□□□ 0.22
UPF1-210ENST00000600689 RSC1A1Q92681 617 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 CLCC1Q96S66 551 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 ABHD6Q9BV23 337 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 OR8D2Q9GZM6 311 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 MED6O75586 246 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 FABP1P07148 127 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 RIDAP52758 137 aaKnown RBP16.43■□□□□ 0.22
UPF1-210ENST00000600689 ACKR1Q16570 336 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 DHRS7BQ6IAN0 325 aaPredicted RBP16.43■□□□□ 0.22
UPF1-210ENST00000600689 UQCC3Q6UW78 93 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 ZNF679Q8IYX0 411 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 FGGYQ96C11 551 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 WDR92Q96MX6 357 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 RPS10P5Q9NQ39 176 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 POLE3Q9NRF9 147 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 PRTFDC1Q9NRG1 225 aa16.43■□□□□ 0.22
UPF1-210ENST00000600689 LOC107986453A0A1B0GWG9 222 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 LRP3O75074 770 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 S100A9P06702 114 aaKnown RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 CRHP06850 196 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 RAB38P57729 211 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 EGR3Q06889 387 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 SLC18B1Q6NT16 456 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 SLC25A42Q86VD7 318 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 OR11A1Q9GZK7 315 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 PTGES2Q9H7Z7 377 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 METTL8Q9H825 291 aaKnown RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 MRPL22Q9NWU5 206 aaKnown RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 COA3Q9Y2R0 106 aaPredicted RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 A0A1W2PPE3 182 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 SCDO00767 359 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 SFTPBP07988 381 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 HOXB5P09067 269 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 SFTA3P0C7M3 94 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 CXCR1P25024 350 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 F2RL1P55085 397 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 FMODQ06828 376 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 SGCAQ16586 387 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 PTCRAQ6ISU1 281 aaPredicted RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 PHYHIPLQ96FC7 376 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 AKR1E2Q96JD6 320 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 PRRT1Q99946 306 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 LAT2Q9GZY6 243 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 CNTD2Q9H8S5 307 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 C9JQL5 133 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 SNRNP70P08621 437 aaKnown RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 ASAH2BP0C7U1 165 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 CPT2P23786 658 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 ADH6P28332 368 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 NAA40Q86UY6 237 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 ZNF101Q8IZC7 436 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 SLC43A2Q8N370 569 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 BAHD1Q8TBE0 780 aaPredicted RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 MITD1Q8WV92 249 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 SPSB2Q99619 263 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 NICN1Q9BSH3 213 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 LMF2Q9BU23 707 aaKnown RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 FN3KRPQ9HA64 309 aa16.42■□□□□ 0.22
UPF1-210ENST00000600689 PRMT8Q9NR22 394 aaPredicted RBP16.42■□□□□ 0.22
UPF1-210ENST00000600689 NPIPB9F8W1W9 429 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 ALG11Q2TAA5 492 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 TAF8Q7Z7C8 310 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 COMMD2Q86X83 199 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 OR52N4Q8NGI2 321 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 GPR119Q8TDV5 335 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 MMABQ96EY8 250 aaPredicted RBP16.41■□□□□ 0.22
UPF1-210ENST00000600689 NRIP2Q9BQI9 281 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 RNF126Q9BV68 326 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 TDRD6O60522 2096 aaKnown RBP16.41■□□□□ 0.22
UPF1-210ENST00000600689 SDCBPO00560 298 aaPredicted RBP16.41■□□□□ 0.22
UPF1-210ENST00000600689 EFSO43281 561 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 H2AFB1P0C5Y9 115 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 ZNF813Q6ZN06 617 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 GAS2L1Q99501 681 aaPredicted RBP16.41■□□□□ 0.22
UPF1-210ENST00000600689 NAA11Q9BSU3 229 aaPredicted RBP16.41■□□□□ 0.22
UPF1-210ENST00000600689 ACKR4Q9NPB9 350 aa16.41■□□□□ 0.22
UPF1-210ENST00000600689 MED12Q93074 2177 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 TCRBV21S2A2A0A5A6 115 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 ABOP16442 354 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 OR13C9Q8NGT0 318 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 GPX7Q96SL4 187 aaPredicted RBP16.4■□□□□ 0.22
UPF1-210ENST00000600689 ZNF587Q96SQ5 575 aaPredicted RBP16.4■□□□□ 0.22
UPF1-210ENST00000600689 GDF2Q9UK05 429 aaPredicted RBP16.4■□□□□ 0.22
UPF1-210ENST00000600689 A0A1B0GTQ1 180 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 FOXS1O43638 330 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 HNRNPA2B1P22626 353 aaKnown RBP16.4■□□□□ 0.22
UPF1-210ENST00000600689 LTBRP36941 435 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 INSM1Q01101 510 aaPredicted RBP16.4■□□□□ 0.22
UPF1-210ENST00000600689 PJVKQ0ZLH3 352 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 FAM76BQ5HYJ3 339 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 RPL7L1Q6DKI1 246 aaKnown RBP16.4■□□□□ 0.22
UPF1-210ENST00000600689 LPCAT3Q6P1A2 487 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 ZNF615Q8N8J6 731 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms