RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 NDUFA2O43678 99 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 FAM20BO75063 409 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 SCG5P05408 212 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 FPR3P25089 353 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 CD200P41217 278 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 EFNB2P52799 333 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 TAS2R41P59536 307 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 CDONQ4KMG0 1287 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 PAGE3Q5JUK9 113 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 CLEC12AQ5QGZ9 265 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 BLOC1S3Q6QNY0 202 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 BTN2A1Q7KYR7 527 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 MAVSQ7Z434 540 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 VMO1Q7Z5L0 202 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 NKAIN4Q8IVV8 208 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 C11orf44Q8N8P7 122 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 OR1F12Q8NHA8 337 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 LRRC8CQ8TDW0 803 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 SLC26A7Q8TE54 656 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 RASSF5Q8WWW0 418 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 SLC7A6Q92536 515 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 APOBEC3DQ96AK3 386 aaPredicted RBP8.34□□□□□ -1.07
TRIM28-210ENST00000597618 PHF21AQ96BD5 680 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 ZNF583Q96ND8 569 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 ECSITQ9BQ95 431 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 CPPED1Q9BRF8 314 aaPredicted RBP8.34□□□□□ -1.07
TRIM28-210ENST00000597618 HCAR1Q9BXC0 346 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 POLR2J2Q9GZM3 115 aaKnown RBP8.34□□□□□ -1.07
TRIM28-210ENST00000597618 POLR2J3Q9H1A7 115 aaKnown RBP8.34□□□□□ -1.07
TRIM28-210ENST00000597618 PPA2Q9H2U2 334 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 TOR3AQ9H497 397 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 SMURF1Q9HCE7 757 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 RNF7Q9UBF6 113 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 MED31Q9Y3C7 131 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 KPTNQ9Y664 436 aa8.34□□□□□ -1.07
TRIM28-210ENST00000597618 TRAV38-1A0A0B4J264 116 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 HTR3EA5X5Y0 456 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 OR10H3O60404 316 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 OR5F1O95221 314 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 PAHP00439 452 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 HLA-DPB1P04440 258 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 DBHP09172 617 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 EEF1B2P24534 225 aaKnown RBP8.33□□□□□ -1.08
TRIM28-210ENST00000597618 RAD23AP54725 363 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 CTXN1P60606 82 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 GUCA2AQ02747 115 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 MAB21L1Q13394 359 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 OR8B8Q15620 311 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 C11orf87Q6NUJ2 197 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 METAP1DQ6UB28 335 aaPredicted RBP8.33□□□□□ -1.08
TRIM28-210ENST00000597618 FUNDC1Q8IVP5 155 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 KLHDC1Q8N7A1 406 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 OR4C13Q8NGP0 309 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 TAMM41Q96BW9 452 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 SEMA6AQ9H2E6 1030 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 FN3KRPQ9HA64 309 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 UFSP2Q9NUQ7 469 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 FOXJ3Q9UPW0 622 aa8.33□□□□□ -1.08
TRIM28-210ENST00000597618 NOP16Q9Y3C1 178 aaKnown RBP8.33□□□□□ -1.08
TRIM28-210ENST00000597618 OOEPA6NGQ2 149 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 H7C1C5 153 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 DVL1O14640 695 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 POLR3GO15318 223 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-210ENST00000597618 KIR2DS4P43632 304 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 LCN6P62502 163 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 BEND6Q5SZJ8 279 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-210ENST00000597618 PRAMEF6Q5VXH4 476 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 SFRP4Q6FHJ7 346 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-210ENST00000597618 C1orf122Q6ZSJ8 110 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 CMTM4Q8IZR5 234 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 ANKRD42Q8N9B4 389 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 BOLLQ8N9W6 283 aaKnown RBP8.32□□□□□ -1.08
TRIM28-210ENST00000597618 OR4F17Q8NGA8 305 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 OR2T6Q8NHC8 308 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 AENQ8WTP8 325 aaKnown RBP8.32□□□□□ -1.08
TRIM28-210ENST00000597618 WWC2-AS2Q96NR7 200 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 OR4F4Q96R69 305 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 RANBP3Q9H6Z4 567 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-210ENST00000597618 CNTD2Q9H8S5 307 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 CCDC167Q9P0B6 97 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 ONECUT1Q9UBC0 465 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 RIMS3Q9UJD0 308 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 RPUSD1Q9UJJ7 312 aaKnown RBP8.32□□□□□ -1.08
TRIM28-210ENST00000597618 SIGLEC9Q9Y336 463 aa8.32□□□□□ -1.08
TRIM28-210ENST00000597618 TEX13CA0A0J9YWL9 993 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 XKRYO14609 159 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 NPFFO15130 113 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 AHCYL1O43865 530 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 MPIG6BO95866 241 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 LSM6P62312 80 aaKnown RBP8.31□□□□□ -1.08
TRIM28-210ENST00000597618 VSNL1P62760 191 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 HOXA4Q00056 320 aaPredicted RBP8.31□□□□□ -1.08
TRIM28-210ENST00000597618 EMX1Q04741 257 aaPredicted RBP8.31□□□□□ -1.08
TRIM28-210ENST00000597618 MPPED2Q15777 294 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 ANKDD1AQ495B1 522 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 CCDC92Q53HC0 331 aaPredicted RBP8.31□□□□□ -1.08
TRIM28-210ENST00000597618 FOXB2Q5VYV0 432 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 DLEU7Q6UYE1 221 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 CALHM3Q86XJ0 350 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 DTX3Q8N9I9 347 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms