RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 MMP16P51512 607 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 ZNF121P58317 390 aaPredicted RBP12.76□□□□□ -0.37
VRK3-212ENST00000596814 RPS25P62851 125 aaKnown RBP12.76□□□□□ -0.37
VRK3-212ENST00000596814 FAM27E3Q08E93 113 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 C4orf17Q53FE4 359 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 WDR38Q5JTN6 314 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 CATSPERDQ86XM0 798 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 ANKRD13BQ86YJ7 626 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 PRSS35Q8N3Z0 413 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 WDR31Q8NA23 367 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 CPEB3Q8NE35 698 aaKnown RBP12.76□□□□□ -0.37
VRK3-212ENST00000596814 S100PBPQ96BU1 408 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 TMED9Q9BVK6 235 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 BRD7Q9NPI1 651 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 FAM206AQ9NX38 181 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 ENPP5Q9UJA9 477 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 OR52A1Q9UKL2 312 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 AMDHD2Q9Y303 409 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 SF3B6Q9Y3B4 125 aaKnown RBP12.76□□□□□ -0.37
VRK3-212ENST00000596814 CEPT1Q9Y6K0 416 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 HIVEP3Q5T1R4 2406 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 GPRIN2O60269 458 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 NOL3O60936 208 aaKnown RBP12.76□□□□□ -0.37
VRK3-212ENST00000596814 C1QL1O75973 258 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 CD1AP06126 327 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 CD53P19397 219 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 PSMA1P25786 263 aaKnown RBP12.76□□□□□ -0.37
VRK3-212ENST00000596814 APEX1P27695 318 aaKnown RBP12.76□□□□□ -0.37
VRK3-212ENST00000596814 KIR3DL2P43630 455 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 SLC6A9P48067 706 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 CCR9P51686 369 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 TPTEP56180 551 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 KRTAP27-1Q3LI81 207 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 TIMM50Q3ZCQ8 353 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 TIMM23BQ5SRD1 257 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 BCL2L15Q5TBC7 163 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 IL17RDQ8NFM7 739 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 STEAP2Q8NFT2 490 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 GHSRQ92847 366 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 TMEM203Q969S6 136 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 PDCD1LG2Q9BQ51 273 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 ACTR6Q9GZN1 396 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 FAM192AQ9GZU8 254 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 NAA50Q9GZZ1 169 aaKnown RBP12.76□□□□□ -0.37
VRK3-212ENST00000596814 COMMD4Q9H0A8 199 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 G6PC2Q9NQR9 355 aa12.76□□□□□ -0.37
VRK3-212ENST00000596814 ERRFI1Q9UJM3 462 aaPredicted RBP12.76□□□□□ -0.37
VRK3-212ENST00000596814 TMEM212A6NML5 194 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 OR4C45A6NMZ5 311 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 FAM90A27PA6NNH2 459 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 ZFPL1O95159 310 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 GABARAPO95166 117 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 ANXA2P07355 339 aaKnown RBP12.75□□□□□ -0.37
VRK3-212ENST00000596814 SLC2A1P11166 492 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 STOMP27105 288 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 CCKARP32238 428 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 TRAM1Q15629 374 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 RSPO1Q2MKA7 263 aaPredicted RBP12.75□□□□□ -0.37
VRK3-212ENST00000596814 DRAM2Q6UX65 266 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 SLC16A12Q6ZSM3 486 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 ZNF584Q8IVC4 421 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 ZNF676Q8N7Q3 588 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 OR5AK2Q8NH90 309 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 ZNF420Q8TAQ5 688 aaPredicted RBP12.75□□□□□ -0.37
VRK3-212ENST00000596814 ISOC1Q96CN7 298 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 OR51E2Q9H255 320 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 STUB1Q9UNE7 303 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 SLC22A13Q9Y226 551 aa12.75□□□□□ -0.37
VRK3-212ENST00000596814 DIDO1Q9BTC0 2240 aaKnown RBP12.75□□□□□ -0.37
VRK3-212ENST00000596814 C16orf97H3BN30 126 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 AIREO43918 545 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 SERPINA5P05154 406 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 ACSM4P0C7M7 580 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 CBR1P16152 277 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 NR4A1P22736 598 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 APLNRP35414 380 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 UGT2B10P36537 528 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 IDH3GP51553 393 aaPredicted RBP12.74□□□□□ -0.37
VRK3-212ENST00000596814 TMBIM6P55061 237 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 FOXB2Q5VYV0 432 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 FAM57BQ71RH2 274 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 RAB2BQ8WUD1 216 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 MS4A3Q96HJ5 214 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 ZNF75AQ96N20 296 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 USB1Q9BQ65 265 aaKnown RBP12.74□□□□□ -0.37
VRK3-212ENST00000596814 PBOV1Q9GZY1 135 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 NUFIP1Q9UHK0 495 aaKnown RBP12.74□□□□□ -0.37
VRK3-212ENST00000596814 ZNF281Q9Y2X9 895 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 SLC25A15Q9Y619 301 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 RTTNQ86VV8 2226 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 LOC100509620A0A075B734 347 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 LOC100506127A0A0U1RQW1 187 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 C5orf49A4QMS7 147 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 ACOD1A6NK06 481 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 RGS9O75916 674 aaPredicted RBP12.74□□□□□ -0.37
VRK3-212ENST00000596814 AGFG2O95081 481 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 IGKV3-15P01624 115 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 UBCP0CG48 685 aaKnown RBP12.74□□□□□ -0.37
VRK3-212ENST00000596814 ZNF14P17017 642 aaPredicted RBP12.74□□□□□ -0.37
VRK3-212ENST00000596814 CRYBB2P43320 205 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms