RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 MITFO75030 526 aaPredicted RBP11.87□□□□□ -0.51
CLIP3-205ENST00000592017 HMGN1P05114 100 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 GZMKP49863 264 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 CDK5Q00535 292 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 PSG7Q13046 419 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 CHRFAM7AQ494W8 412 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 KLHL12Q53G59 568 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 SPATC1Q76KD6 591 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 ZDHHC13Q8IUH4 622 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 OR6N2Q8NGY6 317 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 CMBLQ96DG6 245 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 MSI2Q96DH6 328 aaKnown RBP11.87□□□□□ -0.51
CLIP3-205ENST00000592017 DUS3LQ96G46 650 aaKnown RBP11.87□□□□□ -0.51
CLIP3-205ENST00000592017 COPS4Q9BT78 406 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 SOX7Q9BT81 388 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 SLC25A19Q9HC21 320 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 PNRC2Q9NPJ4 139 aaKnown RBP11.87□□□□□ -0.51
CLIP3-205ENST00000592017 DECR2Q9NUI1 292 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 CUBNO60494 3623 aa11.87□□□□□ -0.51
CLIP3-205ENST00000592017 SAC3D1A6NKF1 404 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 ZNF593O00488 134 aaPredicted RBP11.86□□□□□ -0.51
CLIP3-205ENST00000592017 CDC14BO60729 498 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 LILRA1O75019 489 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 IGHV1-46P01743 117 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 ACSM4P0C7M7 580 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 GSTT1P30711 240 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 SLC6A9P48067 706 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 MMP15P51511 669 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 BLVRAP53004 296 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 CRISP1P54107 249 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 RPS7P62081 194 aaKnown RBP11.86□□□□□ -0.51
CLIP3-205ENST00000592017 ECH1Q13011 328 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 RIN1Q13671 783 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 HLXQ14774 488 aaPredicted RBP11.86□□□□□ -0.51
CLIP3-205ENST00000592017 TAF13Q15543 124 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 PCGF3Q3KNV8 242 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 LINC01590Q5TEZ4 76 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 OR5AS1Q8N127 324 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 ZNF540Q8NDQ6 660 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 OR5L1Q8NGL2 311 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 OR10S1Q8NGN2 331 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 RDH5Q92781 318 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 YIPF5Q969M3 257 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 APOBEC3DQ96AK3 386 aaPredicted RBP11.86□□□□□ -0.51
CLIP3-205ENST00000592017 ZMYND19Q96E35 227 aaPredicted RBP11.86□□□□□ -0.51
CLIP3-205ENST00000592017 COG8Q96MW5 612 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 INTS14Q96SY0 518 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 SAP30LQ9HAJ7 183 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 MSL2Q9HCI7 577 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 CENPMQ9NSP4 180 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 TVP23BQ9NYZ1 205 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 PURGQ9UJV8 347 aaKnown RBP11.86□□□□□ -0.51
CLIP3-205ENST00000592017 OAZ3Q9UMX2 235 aa11.86□□□□□ -0.51
CLIP3-205ENST00000592017 LOC100289279A0A1B0GTE1 492 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 J3QW42 95 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 M0R129 80 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 M0R135 149 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 LMX1BO60663 402 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 GLCEO94923 617 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 LCATP04180 440 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 TACSTD2P09758 323 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 ACHEP22303 614 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 IGFBP5P24593 272 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 COL8A2P25067 703 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 IL2RGP31785 369 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 TPTEP56180 551 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 PRSS12P56730 875 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 ACTR3P61158 418 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 EIF2B1Q14232 305 aaKnown RBP11.85□□□□□ -0.51
CLIP3-205ENST00000592017 TRIP10Q15642 601 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 SNAPC1Q16533 368 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 ZMAT1Q5H9K5 638 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 USP51Q70EK9 711 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 CXXC5Q7LFL8 322 aaKnown RBP11.85□□□□□ -0.51
CLIP3-205ENST00000592017 NAA40Q86UY6 237 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 CPOQ8IVL8 374 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 PARP8Q8N3A8 854 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 BBS1Q8NFJ9 593 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 PTP4A1Q93096 173 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 SPTSSAQ969W0 71 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 SLAMF6Q96DU3 332 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 ZNF799Q96GE5 643 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 CENPNQ96H22 339 aaPredicted RBP11.85□□□□□ -0.51
CLIP3-205ENST00000592017 GABARAPL1Q9H0R8 117 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 NARFLQ9H6Q4 476 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 CHODLQ9H9P2 273 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 CYSLTR2Q9NS75 346 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 ZNF275Q9NSD4 429 aaPredicted RBP11.85□□□□□ -0.51
CLIP3-205ENST00000592017 TMEM160Q9NX00 188 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 CGGBP1Q9UFW8 167 aaPredicted RBP11.85□□□□□ -0.51
CLIP3-205ENST00000592017 CDC42EP3Q9UKI2 254 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 N6AMT1Q9Y5N5 214 aa11.85□□□□□ -0.51
CLIP3-205ENST00000592017 ZNF878C9JN71 531 aa11.84□□□□□ -0.51
CLIP3-205ENST00000592017 SELENOFO60613 162 aa11.84□□□□□ -0.51
CLIP3-205ENST00000592017 FAM157CP0CG43 387 aa11.84□□□□□ -0.51
CLIP3-205ENST00000592017 TUBG1P23258 451 aa11.84□□□□□ -0.51
CLIP3-205ENST00000592017 LIPAP38571 399 aa11.84□□□□□ -0.51
CLIP3-205ENST00000592017 NAA10P41227 235 aaPredicted RBP11.84□□□□□ -0.51
CLIP3-205ENST00000592017 GPR6P46095 362 aaPredicted RBP11.84□□□□□ -0.51
CLIP3-205ENST00000592017 PRKXP51817 358 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms