RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 CLEC2DQ9UHP7 191 aa13.46□□□□□ -0.25
SS18-216ENST00000580751 NAV2Q8IVL1 2488 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 SMIM31A0A1B0GVY4 71 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 SGCEO43556 437 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 ADRA2AP08913 450 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 SPARCP09486 303 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 CD53P19397 219 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 DCTDP32321 178 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 MAP2K4P45985 399 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 NEDD8Q15843 81 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 CCDC58Q4VC31 144 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 ZNF684Q5T5D7 378 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 GPR141Q7Z602 305 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 LHFPL3Q86UP9 236 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 MYPOPQ86VE0 399 aaPredicted RBP13.45□□□□□ -0.26
SS18-216ENST00000580751 ZNF584Q8IVC4 421 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 SLC30A7Q8NEW0 376 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 GJC3Q8NFK1 279 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 KBTBD8Q8NFY9 601 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 OR1J2Q8NGS2 313 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 OR2AJ1Q8NGZ0 328 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 MGLLQ99685 303 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 NIPAL2Q9H841 368 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 TRIM36Q9NQ86 728 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 POU2F3Q9UKI9 436 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 LHFPL6Q9Y693 200 aa13.45□□□□□ -0.26
SS18-216ENST00000580751 AKAP6Q13023 2319 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 IGHV2OR16-5A0A0B4J2B6 119 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 METTL15A6NJ78 407 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 ATP6V1G2-DDX39BF2Z307 99 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 DOK2O60496 412 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 KRT8P05787 483 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 CD1AP06126 327 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 APLNRP35414 380 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 HIST1H3AP68431 136 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 SPOCK1Q08629 439 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 RAB35Q15286 201 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 MED22Q15528 200 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 TIGD6Q17RP2 521 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 TBC1D28Q2M2D7 210 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 HIST2H3PS2Q5TEC6 136 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 OTPQ5XKR4 325 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 LYPD4Q6UWN0 246 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 HIST2H3AQ71DI3 136 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 FAM220AQ7Z4H9 259 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 ZNF679Q8IYX0 411 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 OR13F1Q8NGS4 319 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 AKR7LQ8NHP1 331 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 ST7LQ8TDW4 575 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 RNF133Q8WVZ7 376 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 OR8B4Q96RC9 309 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 ABHD6Q9BV23 337 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 MROQ9BYG7 248 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 FAM192AQ9GZU8 254 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 WNT5BQ9H1J7 359 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 HEATR1Q9H583 2144 aaKnown RBP13.44□□□□□ -0.26
SS18-216ENST00000580751 PLEK2Q9NYT0 353 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 ATPIF1Q9UII2 106 aa13.44□□□□□ -0.26
SS18-216ENST00000580751 ANKRD17O75179 2603 aaKnown RBP13.44□□□□□ -0.26
SS18-216ENST00000580751 A0A1W2PPR1 153 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 SHISA9B4DS77 424 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 INMTO95050 263 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 LCKP06239 509 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 COX5BP10606 129 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 STOMP27105 288 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 APEX1P27695 318 aaKnown RBP13.43□□□□□ -0.26
SS18-216ENST00000580751 CALCRP30988 508 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 TGM4P49221 684 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 GDI2P50395 445 aaKnown RBP13.43□□□□□ -0.26
SS18-216ENST00000580751 GBX2P52951 348 aaPredicted RBP13.43□□□□□ -0.26
SS18-216ENST00000580751 GALK2Q01415 458 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 ECH1Q13011 328 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 TPBGQ13641 420 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 EIF2B1Q14232 305 aaKnown RBP13.43□□□□□ -0.26
SS18-216ENST00000580751 ZNF672Q499Z4 452 aaPredicted RBP13.43□□□□□ -0.26
SS18-216ENST00000580751 ZNF774Q6NX45 483 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 VASH1Q7L8A9 365 aaPredicted RBP13.43□□□□□ -0.26
SS18-216ENST00000580751 LINC00346Q8IVM7 164 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 CPEB3Q8NE35 698 aaKnown RBP13.43□□□□□ -0.26
SS18-216ENST00000580751 THEM6Q8WUY1 208 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 BCL7BQ9BQE9 202 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 HDHD2Q9H0R4 259 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 CDH20Q9HBT6 801 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 GDF2Q9UK05 429 aaPredicted RBP13.43□□□□□ -0.26
SS18-216ENST00000580751 COPS3Q9UNS2 423 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 SPEF1Q9Y4P9 236 aa13.43□□□□□ -0.26
SS18-216ENST00000580751 A6NHS1 94 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 ZNF701M0R085 212 aaPredicted RBP13.42□□□□□ -0.26
SS18-216ENST00000580751 HS3ST1O14792 307 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 RER1O15258 196 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 PLAUP00749 431 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 APOC1P02654 83 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 ZNF35P13682 527 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 PSMB9P28065 219 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 HTR5AP47898 357 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 GP2P55259 537 aaKnown RBP13.42□□□□□ -0.26
SS18-216ENST00000580751 ARMCX4Q5H9R4 360 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 ELFN2Q5R3F8 820 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 ZNF544Q6NX49 715 aa13.42□□□□□ -0.26
SS18-216ENST00000580751 FDX2Q6P4F2 183 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms