RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 GIPC3Q8TF64 312 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 PTP4A1Q93096 173 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 TIMD4Q96H15 378 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 PITX2Q99697 317 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 TEX12Q9BXU0 123 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 BEX2Q9BXY8 128 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 DGCR6LQ9BY27 220 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 SHARPINQ9H0F6 387 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 FN3KQ9H479 309 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 TMEM160Q9NX00 188 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 IL20Q9NYY1 176 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 ZDHHC8Q9ULC8 765 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 IGHV1-69-2A0A0G2JMI3 117 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 OR6C68A6NDL8 312 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 ARRDC5A6NEK1 342 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 CLDN25C9JDP6 229 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 DCTN6O00399 190 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 BHLHE40O14503 412 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 SURF4O15260 269 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 CDC14BO60729 498 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 NCR1O76036 304 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 SOX14O95416 240 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 GPANK1O95872 356 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 NGFP01138 241 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 IGHV1-46P01743 117 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 SELEP16581 610 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 COL8A2P25067 703 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 FMO3P31513 532 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 CRYBB2P43320 205 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 CBX1P83916 185 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 TNFAIP6P98066 277 aaPredicted RBP6.9□□□□□ -1.3
VPS53-214ENST00000572607 MALLQ13021 153 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 CCNIQ14094 377 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 TRIP10Q15642 601 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 SLC18B1Q6NT16 456 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 CORO6Q6QEF8 472 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 PEG10Q86TG7 708 aaKnown RBP6.9□□□□□ -1.3
VPS53-214ENST00000572607 HIPK1Q86Z02 1210 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 LINC00346Q8IVM7 164 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 PHC2Q8IXK0 858 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 LNX2Q8N448 690 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 LINC01356Q8N9X3 169 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 CYB561A3Q8NBI2 242 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 SLC37A3Q8NCC5 494 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 SLC26A10Q8NG04 563 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 CANT1Q8WVQ1 401 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 SLC7A6Q92536 515 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 RAB1CQ92928 201 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 SPTSSAQ969W0 71 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 APOBEC3DQ96AK3 386 aaPredicted RBP6.9□□□□□ -1.3
VPS53-214ENST00000572607 OTULINQ96BN8 352 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 MSI2Q96DH6 328 aaKnown RBP6.9□□□□□ -1.3
VPS53-214ENST00000572607 ATF6BQ99941 703 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 PLA2G12AQ9BZM1 189 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 NARFLQ9H6Q4 476 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 ZNF275Q9NSD4 429 aaPredicted RBP6.9□□□□□ -1.3
VPS53-214ENST00000572607 ARMC1Q9NVT9 282 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 VNN3Q9NY84 501 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 PDP1Q9P0J1 537 aaPredicted RBP6.9□□□□□ -1.3
VPS53-214ENST00000572607 KIF17Q9P2E2 1029 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 PURGQ9UJV8 347 aaKnown RBP6.9□□□□□ -1.3
VPS53-214ENST00000572607 LHFPL6Q9Y693 200 aa6.9□□□□□ -1.3
VPS53-214ENST00000572607 ABCA1O95477 2261 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 TVP23AA6NH52 213 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 ZSCAN5BA6NJL1 495 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 F5H5K5 113 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 FKBP6O75344 327 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 TFP02787 698 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 DBHP09172 617 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 SPARCP09486 303 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 RAC2P15153 192 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 TNFRSF1AP19438 455 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 KITLGP21583 273 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 PAICSP22234 425 aaKnown RBP6.89□□□□□ -1.31
VPS53-214ENST00000572607 POU1F1P28069 291 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 PYCR1P32322 319 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 GRK5P34947 590 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 MMP15P51511 669 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 SLC25A1P53007 311 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 CDH15P55291 814 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 TPTEP56180 551 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 HIST1H3AP68431 136 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 PSG7Q13046 419 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 CRMP1Q14194 572 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 TAF13Q15543 124 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 HIST2H3PS2Q5TEC6 136 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 SLC27A4Q6P1M0 643 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 CD300LDQ6UXZ3 194 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 HIST2H3AQ71DI3 136 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 GLCCI1Q86VQ1 547 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 ATG16L2Q8NAA4 619 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 OR2Z1Q8NG97 314 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 OR8D4Q8NGM9 314 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 OR9Q1Q8NGQ5 310 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 OR6K6Q8NGW6 343 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 OR4Q3Q8NH05 313 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 CCL17Q92583 94 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 GTF3AQ92664 365 aaKnown RBP6.89□□□□□ -1.31
VPS53-214ENST00000572607 YIPF5Q969M3 257 aa6.89□□□□□ -1.31
VPS53-214ENST00000572607 SLC7A6OSQ96CW6 309 aaPredicted RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms