RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 C9orf16Q9BUW7 83 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 HCAR1Q9BXC0 346 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 REG4Q9BYZ8 158 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 TOR3AQ9H497 397 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 RIBC2Q9H4K1 309 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 MARCH7Q9H992 704 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 S100A14Q9HCY8 104 aa11.12□□□□□ -0.63
CLK3-224ENST00000568605 PNRC2Q9NPJ4 139 aaKnown RBP11.12□□□□□ -0.63
CLK3-224ENST00000568605 IGHV4-30-2A0A087WSY4 118 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 SLC22A31A6NKX4 558 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 RNF223E7ERA6 249 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 TPD52L2O43399 206 aaKnown RBP11.11□□□□□ -0.63
CLK3-224ENST00000568605 MITFO75030 526 aaPredicted RBP11.11□□□□□ -0.63
CLK3-224ENST00000568605 LY6HO94772 140 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 ACSM4P0C7M7 580 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 MPV17P39210 176 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 ZNF81P51508 661 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 CDC42P60953 191 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 APOFQ13790 326 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 RHOUQ7L0Q8 258 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 DPY19L4Q7Z388 723 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 GID4Q8IVV7 300 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 ZCCHC24Q8N2G6 241 aaKnown RBP11.11□□□□□ -0.63
CLK3-224ENST00000568605 PQLC1Q8N2U9 271 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 UBASH3BQ8TF42 649 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 ZNRF4Q8WWF5 429 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 PTP4A1Q93096 173 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 ZMYND19Q96E35 227 aaPredicted RBP11.11□□□□□ -0.63
CLK3-224ENST00000568605 KCNJ15Q99712 375 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 EGLN1Q9GZT9 426 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 SP140LQ9H930 580 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 CENPMQ9NSP4 180 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 DECR2Q9NUI1 292 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 NKIRAS2Q9NYR9 191 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 USE1Q9NZ43 259 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 H2AFY2Q9P0M6 372 aaPredicted RBP11.11□□□□□ -0.63
CLK3-224ENST00000568605 TMEFF2Q9UIK5 374 aaPredicted RBP11.11□□□□□ -0.63
CLK3-224ENST00000568605 ZDHHC8Q9ULC8 765 aa11.11□□□□□ -0.63
CLK3-224ENST00000568605 ABCA1O95477 2261 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 EI24O14681 340 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 LCATP04180 440 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 ALPLP05186 524 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 LYNP07948 512 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 RAC2P15153 192 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 SELEP16581 610 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 KITLGP21583 273 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 ACHEP22303 614 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 SLC2A5P22732 501 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 TNFSF4P23510 183 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 ALDH3A2P51648 485 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 MRPS11P82912 194 aaKnown RBP11.1□□□□□ -0.63
CLK3-224ENST00000568605 ZSCAN26Q16670 478 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 KRTAP27-1Q3LI81 207 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 NXNL2Q5VZ03 156 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 C12orf73Q69YU5 71 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 FBXW12Q6X9E4 464 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 TIGD4Q8IY51 512 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 ZNF786Q8N393 782 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 OTOSQ8NHW6 89 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 TMEM163Q8TC26 289 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 ST7LQ8TDW4 575 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 C1QTNF5Q9BXJ0 243 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 OPA3Q9H6K4 179 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 SAP30LQ9HAJ7 183 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 IMPAD1Q9NX62 359 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 PTTG3PQ9NZH4 202 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 PURGQ9UJV8 347 aaKnown RBP11.1□□□□□ -0.63
CLK3-224ENST00000568605 ZNF469Q96JG9 3925 aaPredicted RBP11.1□□□□□ -0.63
CLK3-224ENST00000568605 TLN2Q9Y4G6 2542 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 VPS13CQ709C8 3753 aa11.1□□□□□ -0.63
CLK3-224ENST00000568605 ABCA2Q9BZC7 2435 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 PRKYO43930 277 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 SELENOFO60613 162 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 H2BFMP0C1H6 154 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 OTX1P32242 354 aaPredicted RBP11.09□□□□□ -0.63
CLK3-224ENST00000568605 NAA10P41227 235 aaPredicted RBP11.09□□□□□ -0.63
CLK3-224ENST00000568605 MMP15P51511 669 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 PSG7Q13046 419 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 KCTD18Q6PI47 426 aaPredicted RBP11.09□□□□□ -0.63
CLK3-224ENST00000568605 CLEC9AQ6UXN8 241 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 COLCA1Q6ZS62 124 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 MRPL21Q7Z2W9 205 aaKnown RBP11.09□□□□□ -0.63
CLK3-224ENST00000568605 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.09□□□□□ -0.63
CLK3-224ENST00000568605 CIARTQ8N365 385 aaPredicted RBP11.09□□□□□ -0.63
CLK3-224ENST00000568605 ZNF283Q8N7M2 679 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 TCEANCQ8N8B7 351 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 BBS1Q8NFJ9 593 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 OR10S1Q8NGN2 331 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 RNF133Q8WVZ7 376 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 RDH5Q92781 318 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 EME1Q96AY2 570 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 CMBLQ96DG6 245 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 ELMOD3Q96FG2 381 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 CNN2Q99439 309 aaKnown RBP11.09□□□□□ -0.63
CLK3-224ENST00000568605 ABHD6Q9BV23 337 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 CHODLQ9H9P2 273 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 LAMP5Q9UJQ1 280 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 STARD10Q9Y365 291 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 TMEM14AQ9Y6G1 99 aa11.09□□□□□ -0.63
CLK3-224ENST00000568605 DOCK11Q5JSL3 2073 aa11.08□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms