RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 K7EMT4 169 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 CDC7O00311 574 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 CXCL11O14625 94 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 ASGR1P07306 291 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 ANXA5P08758 320 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 ACSM4P0C7M7 580 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 CD37P11049 281 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 GGT1P19440 569 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 BMI1P35226 326 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 CSNK1EP49674 416 aaKnown RBP1.08□□□□□ -2.24
VPS35-207ENST00000568191 VSX2P58304 361 aaPredicted RBP1.08□□□□□ -2.24
VPS35-207ENST00000568191 DMTNQ08495 405 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 FAM53BQ14153 422 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 IHHQ14623 411 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 PPP1R7Q15435 360 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 LRRC23Q53EV4 343 aaPredicted RBP1.08□□□□□ -2.24
VPS35-207ENST00000568191 HSP90B2PQ58FF3 399 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 CAVIN4Q5BKX8 364 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 GPR107Q5VW38 600 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 LINC00336Q6ZUF6 198 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 CDH26Q8IXH8 852 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 IQCF2Q8IXL9 164 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 ZNF101Q8IZC7 436 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 C11orf72Q8NBR9 251 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 CCDC148Q8NFR7 591 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 SEH1LQ96EE3 360 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 WDR34Q96EX3 536 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 RSG1Q9BU20 258 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 GCOM2Q9BZD3 368 aaPredicted RBP1.08□□□□□ -2.24
VPS35-207ENST00000568191 OR51M1Q9H341 326 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 CRLF2Q9HC73 371 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 PARP11Q9NR21 331 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 HYPKQ9NX55 129 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 GOLT1BQ9Y3E0 138 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 COMMD3-BMI1R4GMX3 469 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 WDR19Q8NEZ3 1342 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 TMEM94Q12767 1356 aa1.08□□□□□ -2.24
VPS35-207ENST00000568191 SMIM26A0A096LP01 95 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 TRAV19A0A0A6YYK7 116 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 LINC00854A0A1B0GVQ3 168 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 SMCO2A6NFE2 343 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 LRRIQ4A6NIV6 560 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 GABRR3A8MPY1 467 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 BTNL10A8MVZ5 291 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 NDUFC2-KCTD14E9PQ53 114 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 H7C1H1 209 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 RAB29O14966 203 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 NEMFO60524 1076 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 ERLIN1O75477 346 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 ME2P23368 584 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 F2RP25116 425 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 PSMB5P28074 263 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 IFNA8P32881 189 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 TGFBR2P37173 567 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 CD151P48509 253 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 HCAR3P49019 387 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 CEBPDP49716 269 aaPredicted RBP1.07□□□□□ -2.24
VPS35-207ENST00000568191 TMED10P49755 219 aaKnown RBP1.07□□□□□ -2.24
VPS35-207ENST00000568191 SSR4P51571 173 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 PPP1CBP62140 327 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 CRADDP78560 199 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 TGM3Q08188 693 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 DDX39BQ13838 428 aaKnown RBP1.07□□□□□ -2.24
VPS35-207ENST00000568191 IDI1Q13907 227 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 ZNF266Q14584 549 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 MRPL23Q16540 153 aaKnown RBP1.07□□□□□ -2.24
VPS35-207ENST00000568191 FAM222AQ5U5X8 452 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 C12orf54Q6X4T0 127 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 MBOAT1Q6ZNC8 495 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 TMEM136Q6ZRR5 245 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 Q6ZS52 159 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 NT5DC3Q86UY8 548 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 TGIF2LXQ8IUE1 241 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 BBS5Q8N3I7 341 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 DRAXINQ8NBI3 349 aaPredicted RBP1.07□□□□□ -2.24
VPS35-207ENST00000568191 TTLQ8NG68 377 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 AGR3Q8TD06 166 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 KLF14Q8TD94 323 aaPredicted RBP1.07□□□□□ -2.24
VPS35-207ENST00000568191 NT5C3BQ969T7 300 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 ZFP3Q96NJ6 502 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 SAMD10Q9BYL1 202 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 CLSTN2Q9H4D0 955 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 METTL7AQ9H8H3 244 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 LRRC40Q9H9A6 602 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 IKZF2Q9UKS7 526 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 CFAP45Q9UL16 551 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 VANGL2Q9ULK5 521 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 FBN3Q75N90 2809 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 TTC41PQ6P2S7 1318 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 MROH5Q6ZUA9 1318 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 TICRRQ7Z2Z1 1910 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 TNIKQ9UKE5 1360 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 SVILO95425 2214 aa1.07□□□□□ -2.24
VPS35-207ENST00000568191 ZSWIM8A7E2V4 1837 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 NCF1BA6NI72 391 aaPredicted RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 NCBP2LA6PVI3 153 aaKnown RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 LRRIQ3A6PVS8 624 aaPredicted RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 NCF1CA8MVU1 366 aaPredicted RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 KRBOX1C9JBD0 128 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 H0Y8G0 127 aa1.06□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms