RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PRR13Q9NZ81 148 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 EDARQ9UNE0 448 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 R4GMQ9 66 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 BRWD1Q9NSI6 2320 aa11.81□□□□□ -0.52
CLN3-210ENST00000563874 IGKV1D-43A0A0B4J1Z2 117 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 CPED1A4D0V7 1026 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 NDUFA2O43678 99 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 ATG12O94817 140 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 PMP2P02689 132 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 AKR1D1P51857 326 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 EFNA3P52797 238 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 INPP5JQ15735 1006 aaPredicted RBP11.8□□□□□ -0.52
CLN3-210ENST00000563874 VWA2Q5GFL6 755 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 C1orf140Q5VVS0 124 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 LPCAT3Q6P1A2 487 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 RNF144BQ7Z419 303 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 LINC00518Q8N0U6 118 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 ROBO4Q8WZ75 1007 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 PHB2Q99623 299 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 PRRT1Q99946 306 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 TMEM231Q9H6L2 316 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 LANCL2Q9NS86 450 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 CYP8B1Q9UNU6 501 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 CFAP54Q96N23 3096 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 EPOPA6NHQ4 379 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 TTLL8A6PVC2 850 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 ZNF823P16415 610 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 ADCYAP1P18509 176 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 FSTP19883 344 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 SLC6A8P48029 635 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 PLCXD2Q0VAA5 305 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 UNC119Q13432 240 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 ZNF260Q3ZCT1 412 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 PABPC1L2AQ5JQF8 200 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 C9orf50Q5SZB4 431 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 ZNF704Q6ZNC4 412 aaPredicted RBP11.8□□□□□ -0.52
CLN3-210ENST00000563874 C9orf40Q8IXQ3 194 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 PAQR4Q8N4S7 273 aaPredicted RBP11.8□□□□□ -0.52
CLN3-210ENST00000563874 AQP3Q92482 292 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 ZC3H10Q96K80 434 aaKnown RBP11.8□□□□□ -0.52
CLN3-210ENST00000563874 LRRC61Q9BV99 259 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 SELENOIQ9C0D9 397 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 VSX1Q9NZR4 365 aaPredicted RBP11.8□□□□□ -0.52
CLN3-210ENST00000563874 PURGQ9UJV8 347 aaKnown RBP11.8□□□□□ -0.52
CLN3-210ENST00000563874 PIAS3Q9Y6X2 628 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 METTL21EPA6NDL7 271 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 FRG2CA6NGY1 282 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 OR6C76A6NM76 312 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 MPTX1A8MV57 137 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 TMEM150CB9EJG8 249 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 PRAMEF26H0Y7S4 382 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 PLPP3O14495 311 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 ABCD4O14678 606 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 ZNF208O43345 1280 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 RPL35P42766 123 aaKnown RBP11.8□□□□□ -0.52
CLN3-210ENST00000563874 ARRB1P49407 418 aaPredicted RBP11.8□□□□□ -0.52
CLN3-210ENST00000563874 SMAD2Q15796 467 aaKnown RBP11.8□□□□□ -0.52
CLN3-210ENST00000563874 DMRTC1Q5HYR2 192 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 TMEM71Q6P5X7 295 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 OR2I1PQ8NGU4 316 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 MITD1Q8WV92 249 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 FOXQ1Q9C009 403 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 PIGMQ9H3S5 423 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 IFT22Q9H7X7 185 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 FN3KRPQ9HA64 309 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 MYOZ1Q9NP98 299 aaPredicted RBP11.8□□□□□ -0.52
CLN3-210ENST00000563874 DZANK1Q9NVP4 752 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 HS3ST3A1Q9Y663 406 aa11.8□□□□□ -0.52
CLN3-210ENST00000563874 A0A0B4J2A0 478 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 TMEM200CA6NKL6 621 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 DDAH2O95865 285 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 ACTL6AO96019 429 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 PGCP20142 388 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 MEF2DQ14814 521 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 HLA-DQA1Q5Y7H0 255 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 C16orf47Q6ZP98 133 aaPredicted RBP11.79□□□□□ -0.52
CLN3-210ENST00000563874 MARCH1Q8TCQ1 289 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 ADAMTS18Q8TE60 1221 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 ZNF721Q8TF20 911 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 DCUN1D4Q92564 292 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 MED29Q9NX70 200 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 SHPKQ9UHJ6 478 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 CSAG2Q9Y5P2 127 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 RTTNQ86VV8 2226 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 ASXL3Q9C0F0 2248 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 PCDH15Q96QU1 1955 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 TMEM218A2RU14 115 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 BLACEA4D250 179 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 MEGF11A6BM72 1044 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 SRSF10O75494 262 aaKnown RBP11.79□□□□□ -0.52
CLN3-210ENST00000563874 DXOO77932 396 aaKnown RBP11.79□□□□□ -0.52
CLN3-210ENST00000563874 SERPINF1P36955 418 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 CAPZBP47756 277 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 PTCRAQ6ISU1 281 aaPredicted RBP11.79□□□□□ -0.52
CLN3-210ENST00000563874 LDLRAD3Q86YD5 345 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.79□□□□□ -0.52
CLN3-210ENST00000563874 GTPBP8Q8N3Z3 284 aaPredicted RBP11.79□□□□□ -0.52
CLN3-210ENST00000563874 DEFB119Q8N690 84 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 OR5AP2Q8NGF4 316 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 TMED6Q8WW62 240 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms