RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CDH24Q86UP0 819 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 DTX2Q86UW9 622 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 ALDH16A1Q8IZ83 802 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 DEPDC4Q8N2C3 294 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 ZCCHC24Q8N2G6 241 aaKnown RBP8.4□□□□□ -1.06
CLK3-208ENST00000562626 IL17RDQ8NFM7 739 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 OR1J2Q8NGS2 313 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 OR1J1Q8NGS3 322 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 FBLIM1Q8WUP2 373 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 THEM6Q8WUY1 208 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 PPP1R14AQ96A00 147 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 RNF166Q96A37 237 aaPredicted RBP8.4□□□□□ -1.06
CLK3-208ENST00000562626 RNFT2Q96EX2 444 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 MARS2Q96GW9 593 aaKnown RBP8.4□□□□□ -1.06
CLK3-208ENST00000562626 SYT3Q9BQG1 590 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 ZNF649Q9BS31 505 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 OR2J1Q9GZK6 312 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 YIPF3Q9GZM5 350 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 ZNF442Q9H7R0 627 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 H2AFY2Q9P0M6 372 aaPredicted RBP8.4□□□□□ -1.06
CLK3-208ENST00000562626 WARS2Q9UGM6 360 aaKnown RBP8.4□□□□□ -1.06
CLK3-208ENST00000562626 MYRFQ9Y2G1 1151 aa8.4□□□□□ -1.06
CLK3-208ENST00000562626 ABCA2Q9BZC7 2435 aa8.4□□□□□ -1.07
CLK3-208ENST00000562626 CCDC168Q8NDH2 2452 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 A0A1W2PQL4 384 aaPredicted RBP8.39□□□□□ -1.07
CLK3-208ENST00000562626 ZNF878C9JN71 531 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 H0YJX3 145 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 M0R135 149 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 OVOL3O00110 214 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 LILRA1O75019 489 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 SRSF10O75494 262 aaKnown RBP8.39□□□□□ -1.07
CLK3-208ENST00000562626 ABHD16AO95870 558 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 PNPP00491 289 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 PTHP01270 115 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 RAF1P04049 648 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 LCKP06239 509 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 APOBEC3AP31941 199 aaPredicted RBP8.39□□□□□ -1.07
CLK3-208ENST00000562626 MTNR1AP48039 350 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 CX3CR1P49238 355 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 CXCR4P61073 352 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 PPP1CBP62140 327 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 MVKQ03426 396 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 MFGE8Q08431 387 aaPredicted RBP8.39□□□□□ -1.07
CLK3-208ENST00000562626 CDK5R2Q13319 367 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 ZNF684Q5T5D7 378 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 TTC23Q5W5X9 447 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 C20orf204Q6ZNR8 217 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 COLCA1Q6ZS62 124 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 KRTAP1-3Q8IUG1 177 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 MUC15Q8N387 334 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 OR2AE1Q8NHA4 323 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 IPCEF1Q8WWN9 437 aaPredicted RBP8.39□□□□□ -1.07
CLK3-208ENST00000562626 SGCDQ92629 289 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 MRPL24Q96A35 216 aaKnown RBP8.39□□□□□ -1.07
CLK3-208ENST00000562626 ZNF799Q96GE5 643 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 OR8B4Q96RC9 309 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 DOK1Q99704 481 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 KCNJ15Q99712 375 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 CCL19Q99731 98 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 APOL4Q9BPW4 351 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 COPS4Q9BT78 406 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 SOX7Q9BT81 388 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 CLN6Q9NWW5 311 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 PTTG3PQ9NZH4 202 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 MRM2Q9UI43 246 aaKnown RBP8.39□□□□□ -1.07
CLK3-208ENST00000562626 ATPIF1Q9UII2 106 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 LAMP5Q9UJQ1 280 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 EXOGQ9Y2C4 368 aaKnown RBP8.39□□□□□ -1.07
CLK3-208ENST00000562626 LRP12Q9Y561 859 aa8.39□□□□□ -1.07
CLK3-208ENST00000562626 MAP1AP78559 2803 aaPredicted RBP8.39□□□□□ -1.07
CLK3-208ENST00000562626 ZNF469Q96JG9 3925 aaPredicted RBP8.38□□□□□ -1.07
CLK3-208ENST00000562626 IGLV3-9A0A075B6K5 115 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 XPNPEP2O43895 674 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 TMCC2O75069 709 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 LY6HO94772 140 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 ZNF250P15622 560 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 SERPINF1P36955 418 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 VHLP40337 213 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 SLC15A1P46059 708 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 ZNF121P58317 390 aaPredicted RBP8.38□□□□□ -1.07
CLK3-208ENST00000562626 ECH1Q13011 328 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 IL18R1Q13478 541 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 EFNB3Q15768 340 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 SPRNQ5BIV9 151 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 GLYATL3Q5SZD4 288 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 MEDAGQ5VYS4 303 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 RGS7BPQ6MZT1 257 aaPredicted RBP8.38□□□□□ -1.07
CLK3-208ENST00000562626 ZNF544Q6NX49 715 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 ZNF322Q6U7Q0 402 aaPredicted RBP8.38□□□□□ -1.07
CLK3-208ENST00000562626 ZNF454Q8N9F8 522 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 OR10H4Q8NGA5 316 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 OR52I1Q8NGK6 324 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 KLF14Q8TD94 323 aaPredicted RBP8.38□□□□□ -1.07
CLK3-208ENST00000562626 C1QTNF5Q9BXJ0 243 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 CACNG6Q9BXT2 260 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 PLK3Q9H4B4 646 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 ELOVL3Q9HB03 270 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 BRD7Q9NPI1 651 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 CBLN4Q9NTU7 201 aa8.38□□□□□ -1.07
CLK3-208ENST00000562626 TBCCD1Q9NVR7 557 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms