RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 C22orf15Q8WYQ4 148 aa14.92□□□□□ -0.02
HDDC3-205ENST00000559898 CLPTM1LQ96KA5 538 aa14.92□□□□□ -0.02
HDDC3-205ENST00000559898 DIRC2Q96SL1 478 aa14.92□□□□□ -0.02
HDDC3-205ENST00000559898 GCM1Q9NP62 436 aa14.92□□□□□ -0.02
HDDC3-205ENST00000559898 CGGBP1Q9UFW8 167 aaPredicted RBP14.92□□□□□ -0.02
HDDC3-205ENST00000559898 TMCC3Q9ULS5 477 aa14.92□□□□□ -0.02
HDDC3-205ENST00000559898 TNFRSF11BO00300 401 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 DCTN3O75935 186 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 CYB5R3P00387 301 aaPredicted RBP14.91□□□□□ -0.02
HDDC3-205ENST00000559898 CLUP10909 449 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 RAC2P15153 192 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 EPHA1P21709 976 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 PCMT1P22061 227 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 MAGEA2P43356 314 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 HMGA2P52926 109 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 DCAF12L2Q5VW00 463 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 LIPNQ5VXI9 398 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 SHQ1Q6PI26 577 aaKnown RBP14.91□□□□□ -0.02
HDDC3-205ENST00000559898 COLCA1Q6ZS62 124 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 ATG16L2Q8NAA4 619 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 OR8G5Q8NG78 346 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 MEGF10Q96KG7 1140 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 CCT8L2Q96SF2 557 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 IL19Q9UHD0 177 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 CYB5R1Q9UHQ9 305 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 PPP1R3CQ9UQK1 317 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 CDH10Q9Y6N8 788 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 U3KQV3 271 aa14.91□□□□□ -0.02
HDDC3-205ENST00000559898 TENM1Q9UKZ4 2725 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 TMEM178BH3BS89 294 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 SOX14O95416 240 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 FSHBP01225 129 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 HLA-DQA2P01906 255 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 GYPBP06028 91 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 NOS3P29474 1203 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 ZMAT1Q5H9K5 638 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 DNM1P34Q6PK57 102 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 C1QL2Q7Z5L3 287 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 LRRC28Q86X40 367 aaPredicted RBP14.9□□□□□ -0.02
HDDC3-205ENST00000559898 SLC37A3Q8NCC5 494 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 C19orf18Q8NEA5 215 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 APOBEC3DQ96AK3 386 aaPredicted RBP14.9□□□□□ -0.02
HDDC3-205ENST00000559898 PITX2Q99697 317 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 SLC6A7Q99884 636 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 C1QTNF5Q9BXJ0 243 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 HDHD2Q9H0R4 259 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 ESM1Q9NQ30 184 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 ARMC1Q9NVT9 282 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 ACTR3BQ9P1U1 418 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 ATPIF1Q9UII2 106 aa14.9□□□□□ -0.02
HDDC3-205ENST00000559898 SOX21Q9Y651 276 aaPredicted RBP14.9□□□□□ -0.02
HDDC3-205ENST00000559898 A0A0G2JMP0 313 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 A0A0X1KG70 313 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 F5H0A9 414 aaPredicted RBP14.89□□□□□ -0.03
HDDC3-205ENST00000559898 ANPEPP15144 967 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 BTG1P62324 171 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 TRAP1Q12931 704 aaKnown RBP14.89□□□□□ -0.03
HDDC3-205ENST00000559898 GK2Q14410 553 aaPredicted RBP14.89□□□□□ -0.03
HDDC3-205ENST00000559898 SNAI3Q3KNW1 292 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 MOGAT3Q86VF5 341 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 AQP11Q8NBQ7 271 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 DEFB108BQ8NET1 73 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 OR4M2Q8NGB6 313 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 DVL3Q92997 716 aaPredicted RBP14.89□□□□□ -0.03
HDDC3-205ENST00000559898 NSL1Q96IY1 281 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 ATF6BQ99941 703 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 SLC30A2Q9BRI3 323 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 C7orf69Q9H7B7 122 aa14.89□□□□□ -0.03
HDDC3-205ENST00000559898 PATZ1Q9HBE1 687 aaKnown RBP14.89□□□□□ -0.03
HDDC3-205ENST00000559898 IQCF6A8MYZ5 107 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 CCNB2O95067 398 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 TUBG1P23258 451 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 SLC6A9P48067 706 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 RGS6P49758 472 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 SLC3A1Q07837 685 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 MAB21L1Q13394 359 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 CRMP1Q14194 572 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 LCN8Q6JVE9 175 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 TMEM179BQ7Z7N9 219 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 ZNF511Q8NB15 262 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 OR2AE1Q8NHA4 323 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 SLCO4A1Q96BD0 722 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 NIPSNAP1Q9BPW8 284 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 HCAR1Q9BXC0 346 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 MED20Q9H944 212 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 TUBG2Q9NRH3 451 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 IL20Q9NYY1 176 aa14.88□□□□□ -0.03
HDDC3-205ENST00000559898 CEACAM18A8MTB9 384 aa14.87□□□□□ -0.03
HDDC3-205ENST00000559898 IDH3BO43837 385 aa14.87□□□□□ -0.03
HDDC3-205ENST00000559898 LCATP04180 440 aa14.87□□□□□ -0.03
HDDC3-205ENST00000559898 TNFRSF1AP19438 455 aa14.87□□□□□ -0.03
HDDC3-205ENST00000559898 TNFSF4P23510 183 aa14.87□□□□□ -0.03
HDDC3-205ENST00000559898 IFNGR2P38484 337 aa14.87□□□□□ -0.03
HDDC3-205ENST00000559898 KLF17Q5JT82 389 aaPredicted RBP14.87□□□□□ -0.03
HDDC3-205ENST00000559898 PRAMEF6Q5VXH4 476 aa14.87□□□□□ -0.03
HDDC3-205ENST00000559898 PGM2L1Q6PCE3 622 aa14.87□□□□□ -0.03
HDDC3-205ENST00000559898 RASSF6Q6ZTQ3 369 aa14.87□□□□□ -0.03
HDDC3-205ENST00000559898 SPATC1Q76KD6 591 aa14.87□□□□□ -0.03
HDDC3-205ENST00000559898 PEG10Q86TG7 708 aaKnown RBP14.87□□□□□ -0.03
HDDC3-205ENST00000559898 PROKR2Q8NFJ6 384 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms