RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ANKRD60Q9BZ19 345 aa8.7□□□□□ -1.02
USP3-216ENST00000559873 OR51B6Q9H340 312 aa8.7□□□□□ -1.02
USP3-216ENST00000559873 HEATR1Q9H583 2144 aaKnown RBP8.7□□□□□ -1.02
USP3-216ENST00000559873 MOB1AQ9H8S9 216 aa8.7□□□□□ -1.02
USP3-216ENST00000559873 PLEKHF2Q9H8W4 249 aa8.7□□□□□ -1.02
USP3-216ENST00000559873 INPP5EQ9NRR6 644 aa8.7□□□□□ -1.02
USP3-216ENST00000559873 GPR160Q9UJ42 338 aa8.7□□□□□ -1.02
USP3-216ENST00000559873 AKAP6Q13023 2319 aa8.7□□□□□ -1.02
USP3-216ENST00000559873 A0A1W2PPR1 153 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 A0A1W2PPW3 197 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 EFCAB10A6NFE3 127 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 B9A039 149 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 WBP4O75554 376 aaKnown RBP8.69□□□□□ -1.02
USP3-216ENST00000559873 MT-ND5P03915 603 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 RAF1P04049 648 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 LCATP04180 440 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 ANXA2P07355 339 aaKnown RBP8.69□□□□□ -1.02
USP3-216ENST00000559873 DBHP09172 617 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 GNAO1P09471 354 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 OR4A8P0C604 315 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 ACSM4P0C7M7 580 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 PSKH1P11801 424 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 PRF1P14222 555 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 MYL12AP19105 171 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 MYF6P23409 242 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 DNASE1P24855 282 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 OTX1P32242 354 aaPredicted RBP8.69□□□□□ -1.02
USP3-216ENST00000559873 DCTDP32321 178 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 TTKP33981 857 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 THBS4P35443 961 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 SERPINF1P36955 418 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 WNT5AP41221 380 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 CX3CR1P49238 355 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 PRKXP51817 358 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 RIDAP52758 137 aaKnown RBP8.69□□□□□ -1.02
USP3-216ENST00000559873 PPP1CBP62140 327 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 CSNK2BP67870 215 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 ROM1Q03395 351 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 EFNB3Q15768 340 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 KRTAP27-1Q3LI81 207 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 ZNF718Q3SXZ3 478 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 ZMAT1Q5H9K5 638 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 LRRN1Q6UXK5 716 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 PLEKHG7Q6ZR37 379 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 ZNF679Q8IYX0 411 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 ZNF101Q8IZC7 436 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 PAQR4Q8N4S7 273 aaPredicted RBP8.69□□□□□ -1.02
USP3-216ENST00000559873 ACBD7Q8N6N7 88 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 OR52H1Q8NGJ2 320 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 OR10S1Q8NGN2 331 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 HAVCR2Q8TDQ0 301 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 SNX33Q8WV41 574 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 SLC7A6Q92536 515 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 NEUROG1Q92886 237 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 MRPL24Q96A35 216 aaKnown RBP8.69□□□□□ -1.02
USP3-216ENST00000559873 LGALS12Q96DT0 336 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 OR8B4Q96RC9 309 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 TBX5Q99593 518 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 CXorf56Q9H5V9 222 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 OPA3Q9H6K4 179 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 CBLN4Q9NTU7 201 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 CHCHD3Q9NX63 227 aaKnown RBP8.69□□□□□ -1.02
USP3-216ENST00000559873 SCN3BQ9NY72 215 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 SLCO1C1Q9NYB5 712 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 CGGBP1Q9UFW8 167 aaPredicted RBP8.69□□□□□ -1.02
USP3-216ENST00000559873 BLOC1S6Q9UL45 172 aa8.69□□□□□ -1.02
USP3-216ENST00000559873 ANKRD17O75179 2603 aaKnown RBP8.68□□□□□ -1.02
USP3-216ENST00000559873 DAPL1A0PJW8 107 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 XRCC2O43543 280 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 GPRIN2O60269 458 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 FAM20BO75063 409 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 SULT1C4O75897 302 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 APOL3O95236 402 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 ERCC1P07992 297 aaPredicted RBP8.68□□□□□ -1.02
USP3-216ENST00000559873 PIPP12273 146 aaPredicted RBP8.68□□□□□ -1.02
USP3-216ENST00000559873 CFL1P23528 166 aaKnown RBP8.68□□□□□ -1.02
USP3-216ENST00000559873 DCKP27707 260 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 EVX1P49640 407 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 KLF3P57682 345 aaPredicted RBP8.68□□□□□ -1.02
USP3-216ENST00000559873 ADIPOQQ15848 244 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 NKPD1Q17RQ9 610 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 CDH24Q86UP0 819 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 DTX2Q86UW9 622 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 LILRB1Q8NHL6 650 aaPredicted RBP8.68□□□□□ -1.02
USP3-216ENST00000559873 SYNPRQ8TBG9 265 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 SLC25A40Q8TBP6 338 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 FBLIM1Q8WUP2 373 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 AMELYQ99218 206 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 C1QTNF5Q9BXJ0 243 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 OR10A2Q9H208 303 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 RGCCQ9H4X1 137 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 AMBNQ9NP70 447 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 DYNLRB1Q9NP97 96 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 MRPS18AQ9NVS2 196 aaKnown RBP8.68□□□□□ -1.02
USP3-216ENST00000559873 CNOT2Q9NZN8 540 aaKnown RBP8.68□□□□□ -1.02
USP3-216ENST00000559873 AASSQ9UDR5 926 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 ST6GALNAC2Q9UJ37 374 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 ZNF391Q9UJN7 358 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 COPS3Q9UNS2 423 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 LAMP3Q9UQV4 416 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms