RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RPS23P62266 143 aaKnown RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 PAFAH1B2P68402 229 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 CDH17Q12864 832 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 GINS1Q14691 196 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 NCF4Q15080 339 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 RBMY1FQ15415 496 aaKnown RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 MPPED2Q15777 294 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 ZNF829Q3KNS6 432 aaPredicted RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 NKAIN1Q4KMZ8 207 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 BEX5Q5H9J7 111 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 C6orf183Q5T699 404 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 Q6ZR03 302 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 FAM92BQ6ZTR7 304 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 ABHD13Q7L211 337 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 PEX26Q7Z412 305 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 C6orf120Q7Z4R8 191 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 ABHD12BQ7Z5M8 362 aaPredicted RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 HORMAD1Q86X24 394 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 MYOCDQ8IZQ8 938 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 VKORC1L1Q8N0U8 176 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 METTL13Q8N6R0 699 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 Q8N7P7 452 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 C15orf56Q8N910 161 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 Q8N976 141 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 CHST4Q8NCG5 386 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 TMEM104Q8NE00 496 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 FBXO36Q8NEA4 188 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 DUSP18Q8NEJ0 188 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 OR10W1Q8NGF6 305 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 OR51L1Q8NGJ5 315 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 ZNF596Q8TC21 504 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 LKAAEAR1Q8TD35 194 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 BAALCQ8WXS3 180 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 TFGQ92734 400 aaPredicted RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 RAB1CQ92928 201 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 MRGPRFQ96AM1 343 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 RBMXL1Q96E39 390 aaKnown RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 NRBF2Q96F24 287 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 BMFQ96LC9 184 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 JSRP1Q96MG2 331 aaPredicted RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 ZNF285Q96NJ3 590 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 SCGB3A2Q96PL1 93 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 CSPG4P5Q96PW8 444 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 SLIRPQ9GZT3 109 aaKnown RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 IL22Q9GZX6 179 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 CHRNA10Q9GZZ6 450 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 TPK1Q9H3S4 243 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 SAV1Q9H4B6 383 aaPredicted RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 ASB8Q9H765 288 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 C12orf10Q9HB07 376 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 NOX3Q9HBY0 568 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 MRM3Q9HC36 420 aaKnown RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 ZC4H2Q9NQZ6 224 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 DYRK4Q9NR20 520 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 ADAM22Q9P0K1 906 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 SLC17A7Q9P2U7 560 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 ZNF222Q9UK12 451 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 TSSC4Q9Y5U2 329 aaPredicted RBP1.05□□□□□ -2.24
USP3-209ENST00000558925 ARID1AO14497 2285 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 TNIKQ9UKE5 1360 aa1.05□□□□□ -2.24
USP3-209ENST00000558925 NEURL4Q96JN8 1562 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 TRIOBPQ9H2D6 2365 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 IGLV11-55A0A075B6I3 123 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 A0A1B0GUH1 482 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 SYCE1LA8MT33 242 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ANKRD65E5RJM6 399 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 TRDMT1O14717 391 aaKnown RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 ERI3O43414 337 aaKnown RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 KDELR3O43731 214 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ANGPTL7O43827 346 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 GMDSO60547 372 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 SLC16A7O60669 478 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ENTPD5O75356 428 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 HSBP1O75506 76 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 RP2O75695 350 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 HPRT1P00492 218 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ZNF806P0C7X5 589 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 RAB3BP20337 219 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 PTNP21246 168 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 MSR1P21757 451 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 IL32P24001 234 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 GGT2P36268 569 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 TNFSF9P41273 254 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 PPICP45877 212 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 HCAR3P49019 387 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 CDKN2DP55273 166 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 CLDN18P56856 261 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 UBE2NP61088 152 aaKnown RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 RAP1AP62834 184 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 CYP24A1Q07973 514 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 SYCNQ0VAF6 134 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 TCP10Q12799 353 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ERCC8Q13216 396 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 PTGES3Q15185 160 aaKnown RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 HNRNPA1L2Q32P51 320 aaKnown RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 TMEM255AQ5JRV8 349 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 MLIPQ5VWP3 458 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 SAXO2Q658L1 398 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 KRTAP5-7Q6L8G8 165 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms