RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 DDX28Q9NUL7 540 aaKnown RBP7.5□□□□□ -1.21
USP3-208ENST00000558285 ACOXLQ9NUZ1 547 aa7.5□□□□□ -1.21
USP3-208ENST00000558285 WARS2Q9UGM6 360 aaKnown RBP7.5□□□□□ -1.21
USP3-208ENST00000558285 SIGLEC7Q9Y286 467 aa7.5□□□□□ -1.21
USP3-208ENST00000558285 F8P00451 2351 aa7.5□□□□□ -1.21
USP3-208ENST00000558285 LOC390937A0A1W2PQ73 354 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 PLSCR5A0PG75 271 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 J3QW42 95 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ARPC3O15145 178 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 LCKP06239 509 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 COX5BP10606 129 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 STOMP27105 288 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ERP29P30040 261 aaKnown RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 TALDO1P37837 337 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ETV6P41212 452 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 OMPP47874 163 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 KLF3P57682 345 aaPredicted RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 TSPAN31Q12999 210 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 IL18R1Q13478 541 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ADIPOQQ15848 244 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 RFX4Q33E94 735 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 C11orf71Q6IPW1 123 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 CYP2R1Q6VVX0 501 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 B3GLCTQ6Y288 498 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 OR5L1Q8NGL2 311 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 OR4C15Q8NGM1 316 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ZNF519Q8TB69 540 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 MRPL24Q96A35 216 aaKnown RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 ANAPC16Q96DE5 110 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ZNF837Q96EG3 531 aaPredicted RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 MAP6Q96JE9 813 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 TSPAN32Q96QS1 320 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 CENPOQ9BU64 300 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 CCDC32Q9BV29 185 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 CDADC1Q9BWV3 514 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 REG4Q9BYZ8 158 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 NRIP3Q9NQ35 241 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 KCNG2Q9UJ96 466 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 SAMHD1Q9Y3Z3 626 aaKnown RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 TEX13CA0A0J9YWL9 993 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 TRBV4-1A0A0J9YWV2 114 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 HMX3A6NHT5 357 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 LOC110117498-PIK3R3F6TDL0 507 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 SMAD7O15105 426 aaKnown RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 NDUFA2O43678 99 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 TLX2O43763 284 aaPredicted RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 NOS1APO75052 506 aaPredicted RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 TIPRLO75663 272 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 SLC2A10O95528 541 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 CD8AP01732 235 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 IGHV4-39P01824 125 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ZNF35P13682 527 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 PRKACAP17612 351 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 PCMT1P22061 227 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 CCNOP22674 350 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 LAP3P28838 519 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 THBS4P35443 961 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 CBX5P45973 191 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 LIMS1P48059 325 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 RGS6P49758 472 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 LSM6P62312 80 aaKnown RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 COX10Q12887 443 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ECH1Q13011 328 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 CARTPTQ16568 116 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ZNF718Q3SXZ3 478 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 PABPC1L2AQ5JQF8 200 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 OR2T5Q6IEZ7 315 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 C1orf94Q6P1W5 598 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 SLC25A47Q6Q0C1 308 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 TBPL2Q6SJ96 375 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 C8orf59Q8N0T1 100 aaPredicted RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 LINC00469Q8N7U9 141 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 OR2AJ1Q8NGZ0 328 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 OR2T29Q8NH02 315 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 SYNPRQ8TBG9 265 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ERMAPQ96PL5 475 aaPredicted RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 DCLRE1CQ96SD1 692 aaKnown RBP7.49□□□□□ -1.21
USP3-208ENST00000558285 DIRC2Q96SL1 478 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 RSRP1Q9BUV0 290 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 PRRG3Q9BZD7 231 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 RERGLQ9H628 205 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 DLL4Q9NR61 685 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 REV1Q9UBZ9 1251 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 ENOPH1Q9UHY7 261 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 DUSP13Q9UII6 198 aa7.49□□□□□ -1.21
USP3-208ENST00000558285 SLC16A7O60669 478 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 PTP4A3O75365 173 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 TXNDC12O95881 172 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 SEMG1P04279 462 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 IL7P13232 177 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 ZNF823P16415 610 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 PAICSP22234 425 aaKnown RBP7.48□□□□□ -1.21
USP3-208ENST00000558285 TNFSF4P23510 183 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 CALCRP30988 508 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 HMGA2P52926 109 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 NKX2-5P52952 324 aaPredicted RBP7.48□□□□□ -1.21
USP3-208ENST00000558285 UCP2P55851 309 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 TNK1Q13470 666 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 IQCCQ4KMZ1 466 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 CCBE1Q6UXH8 406 aaPredicted RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms