RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 ARL8BQ9NVJ2 186 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 VSX1Q9NZR4 365 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-222ENST00000556768 ACTR3BQ9P1U1 418 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 RTTNQ86VV8 2226 aa6.25□□□□□ -1.41
SCFD1-222ENST00000556768 TNFRSF11BO00300 401 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 ARPC3O15145 178 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 TXNDC12O95881 172 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 FAM107AO95990 144 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 NGFP01138 241 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 MSMBP08118 114 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 CALB2P22676 271 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 MTNR1BP49286 362 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 DVL1P1P54792 670 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-222ENST00000556768 RPL11P62913 178 aaKnown RBP6.24□□□□□ -1.41
SCFD1-222ENST00000556768 MVKQ03426 396 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 TSPAN31Q12999 210 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 ECH1Q13011 328 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 ENDOGQ14249 297 aaKnown RBP6.24□□□□□ -1.41
SCFD1-222ENST00000556768 FAM98BQ52LJ0 330 aaKnown RBP6.24□□□□□ -1.41
SCFD1-222ENST00000556768 SLC27A4Q6P1M0 643 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 FAHD2BQ6P2I3 314 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-222ENST00000556768 LEG1Q6P5S2 330 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 CYP2R1Q6VVX0 501 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 OVCH2Q7RTZ1 564 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 TSEN54Q7Z6J9 526 aaKnown RBP6.24□□□□□ -1.41
SCFD1-222ENST00000556768 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-222ENST00000556768 OR1F12Q8NHA8 337 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 TMEM186Q96B77 213 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 FAHD2AQ96GK7 314 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 DCLRE1CQ96SD1 692 aaKnown RBP6.24□□□□□ -1.41
SCFD1-222ENST00000556768 NMNAT3Q96T66 252 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 HDHD2Q9H0R4 259 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 HIF1ANQ9NWT6 349 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 TREM2Q9NZC2 230 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 ATPIF1Q9UII2 106 aa6.24□□□□□ -1.41
SCFD1-222ENST00000556768 ISPDA4D126 451 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 NCR1O76036 304 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 PPP1R3DO95685 299 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 GAAP10253 952 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 ZNF823P16415 610 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 ZNF26P17031 533 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-222ENST00000556768 HOXB6P17509 224 aaKnown RBP6.23□□□□□ -1.41
SCFD1-222ENST00000556768 IL2RGP31785 369 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 MPV17P39210 176 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 CDKN2AP42771 156 aaKnown RBP6.23□□□□□ -1.41
SCFD1-222ENST00000556768 MMP15P51511 669 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 TNFAIP6P98066 277 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-222ENST00000556768 MALLQ13021 153 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 PSG7Q13046 419 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 TRIM25Q14258 630 aaKnown RBP6.23□□□□□ -1.41
SCFD1-222ENST00000556768 RFPL4BQ6ZWI9 263 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 MFSD4AQ8N468 514 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 FITM2Q8N6M3 262 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 OR4K13Q8NH42 304 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 CLDND2Q8NHS1 167 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 ST7LQ8TDW4 575 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 YIPF5Q969M3 257 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 APOBEC3DQ96AK3 386 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-222ENST00000556768 CMBLQ96DG6 245 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 SAMD8Q96LT4 415 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 ZNF582Q96NG8 517 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-222ENST00000556768 PITX2Q99697 317 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 GAL3ST1Q99999 423 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 HCAR1Q9BXC0 346 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 TRIM15Q9C019 465 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 LPAR2Q9HBW0 351 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 MSL2Q9HCI7 577 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 RPRD1BQ9NQG5 326 aaKnown RBP6.23□□□□□ -1.41
SCFD1-222ENST00000556768 B9D1Q9UPM9 204 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 ZNF281Q9Y2X9 895 aa6.23□□□□□ -1.41
SCFD1-222ENST00000556768 A0A0G2JMP0 313 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 A0A0X1KG70 313 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 LOC100996750A0A140TA64 210 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 DYNC1I1O14576 645 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 GNGT2O14610 69 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 RER1O15258 196 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 PHF1O43189 567 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-222ENST00000556768 RP2O75695 350 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 CCNB2O95067 398 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 MPZL1O95297 269 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 IGHV1-46P01743 117 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 ADH4P08319 380 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 RAC2P15153 192 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 HIST1H1CP16403 213 aaKnown RBP6.22□□□□□ -1.41
SCFD1-222ENST00000556768 SELEP16581 610 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 HMGA2P52926 109 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 SRSF2Q01130 221 aaKnown RBP6.22□□□□□ -1.41
SCFD1-222ENST00000556768 KCNMB1Q16558 191 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 CLEC12AQ5QGZ9 265 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 IL17RELQ6ZVW7 336 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 PTCHD4Q6ZW05 846 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 OR6V1Q8N148 313 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 Q8N1Y9 231 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 KLHL36Q8N4N3 616 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 RFLNBQ8N5W9 214 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 ATG16L2Q8NAA4 619 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 PROKR2Q8NFJ6 384 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 OR2Z1Q8NG97 314 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 OR4M2Q8NGB6 313 aa6.22□□□□□ -1.41
SCFD1-222ENST00000556768 OR52E2Q8NGJ4 325 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms