RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 GPM6BQ13491 265 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 NCF4Q15080 339 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 MAJINQ3KP22 176 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 KLHL12Q53G59 568 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 RNASE13Q5GAN3 156 aaKnown RBP0.72□□□□□ -2.29
SRP54-207ENST00000555535 C6orf226Q5I0X4 101 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 PRAMEF5Q5TYX0 476 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 PRAMEF6Q5VXH4 476 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 CASC1Q6TDU7 716 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 SLC25A48Q6ZT89 311 aaKnown RBP0.72□□□□□ -2.29
SRP54-207ENST00000555535 SLC16A13Q7RTY0 426 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 TMEM135Q86UB9 458 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 CMTM1Q8IZ96 169 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 LRRC75A-AS1Q8N1F1 130 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 ZCCHC7Q8N3Z6 543 aaKnown RBP0.72□□□□□ -2.29
SRP54-207ENST00000555535 ZNF680Q8NEM1 530 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 SPATA4Q8NEY3 305 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 OR5T1Q8NG75 326 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 OR11H7Q8NGC8 314 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 GHSRQ92847 366 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 FBXO32Q969P5 355 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 MRGPRFQ96AM1 343 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 TM2D3Q9BRN9 247 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 CENPKQ9BS16 269 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 PARP12Q9H0J9 701 aaKnown RBP0.72□□□□□ -2.29
SRP54-207ENST00000555535 LRRC40Q9H9A6 602 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 RETNQ9HD89 108 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 C8orf17Q9NRJ1 99 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 AGPAT4Q9NRZ5 378 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 PSMC3IPQ9P2W1 217 aaPredicted RBP0.72□□□□□ -2.29
SRP54-207ENST00000555535 PISDQ9UG56 409 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 FARSAQ9Y285 508 aaKnown RBP0.72□□□□□ -2.29
SRP54-207ENST00000555535 CBY1Q9Y3M2 126 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 DDX49Q9Y6V7 483 aaKnown RBP0.72□□□□□ -2.29
SRP54-207ENST00000555535 LTBP2Q14767 1821 aa0.72□□□□□ -2.29
SRP54-207ENST00000555535 SETD1AO15047 1707 aaKnown RBP0.72□□□□□ -2.29
SRP54-207ENST00000555535 CACNA1SQ13698 1873 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 COL22A1Q8NFW1 1626 aaPredicted RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 MAPK8IP3Q9UPT6 1336 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 KMT2BQ9UMN6 2715 aaPredicted RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 CENPVL3A0A0U1RRI6 287 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 OR5H1A6NKK0 313 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 EIF3HO15372 352 aaKnown RBP eCLIP0.71□□□□□ -2.3
SRP54-207ENST00000555535 SOCS1O15524 211 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 EIF4E2O60573 245 aaKnown RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 KLHL41O60662 606 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 EIF1BO60739 113 aaKnown RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 SLC22A5O76082 557 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 KLHL2O95198 593 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 CYB5R3P00387 301 aaPredicted RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 CST1P01037 141 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 CD74P04233 296 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 RPN2P04844 631 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 ARG1P05089 322 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 ERGP11308 486 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 TCP1P17987 556 aaKnown RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 IL32P24001 234 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 U2AF2P26368 475 aaKnown RBP eCLIP0.71□□□□□ -2.35e-7■□□□□ 10.6
SRP54-207ENST00000555535 GPX4P36969 197 aaPredicted RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 NAA10P41227 235 aaPredicted RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 EIF1P41567 113 aaKnown RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 SSR4P51571 173 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 CMC4P56277 68 aaPredicted RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 STXBP1P61764 594 aaKnown RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 BST2Q10589 180 aaKnown RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 DDX39BQ13838 428 aaKnown RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 OR7A5Q15622 319 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 YIF1BQ5BJH7 314 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 CTSL3PQ5NE16 218 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 CENPPQ6IPU0 288 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 SLC8B1Q6J4K2 584 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 TMEM136Q6ZRR5 245 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 Q6ZSR3 168 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 ADM2Q7Z4H4 148 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 EGFL6Q8IUX8 553 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 FAM71AQ8IYT1 594 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 STK40Q8N2I9 435 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 CBR4Q8N4T8 237 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 CHST4Q8NCG5 386 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 FBXL13Q8NEE6 735 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 OR1J4Q8NGS1 313 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 APH1BQ8WW43 257 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 PIBF1Q8WXW3 757 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 CPNE4Q96A23 557 aaPredicted RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 TMEM230Q96A57 120 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 TUBGCP3Q96CW5 907 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 TRIM44Q96DX7 344 aaPredicted RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 DUS3LQ96G46 650 aaKnown RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 GPR82Q96P67 336 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 ZBTB18Q99592 522 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 RSG1Q9BU20 258 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 TMEM243Q9BU79 118 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 OR51M1Q9H341 326 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 C1orf198Q9H425 327 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 METTL7AQ9H8H3 244 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 TMEM27Q9HBJ8 222 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 MYOZ1Q9NP98 299 aaPredicted RBP0.71□□□□□ -2.3
SRP54-207ENST00000555535 HRASLS2Q9NWW9 162 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 SLC2A8Q9NY64 477 aa0.71□□□□□ -2.3
SRP54-207ENST00000555535 UXTQ9UBK9 157 aaPredicted RBP0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms