RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 AVL9Q8NBF6 648 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 OR8U1Q8NH10 309 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF417Q8TAU3 575 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 MARCH1Q8TCQ1 289 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CCDC107Q8WV48 283 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ASB5Q8WWX0 329 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RSC1A1Q92681 617 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ANKRD9Q96BM1 317 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CTHRC1Q96CG8 243 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 FOXRED1Q96CU9 486 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 KTI12Q96EK9 354 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 TEX101Q9BY14 249 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 POTEKPQ9BYX7 375 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 TCEAL2Q9H3H9 227 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CHMP1AQ9HD42 196 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 Q9N2J8 555 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 GDE1Q9NZC3 331 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 LPAR3Q9UBY5 353 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 PIAS3Q9Y6X2 628 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 MYO7BQ6PIF6 2116 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 AHCTF1Q8WYP5 2266 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RNASEK-C17orf49H0YIS7 233 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 CDC40O60508 579 aaKnown RBP eCLIP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 FBXO24O75426 580 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 PMP2P02689 132 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 FCGR3AP08637 254 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 GNB3P16520 340 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ACKR3P25106 362 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 PSMB6P28072 239 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 PPICP45877 212 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 PSMD4P55036 377 aaKnown RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RIPPLY1Q0D2K3 151 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SLC9A3R2Q15599 337 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ALG11Q2TAA5 492 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SLC35D3Q5M8T2 416 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RPL7L1Q6DKI1 246 aaKnown RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF585AQ6P3V2 769 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 UNQ6494/PRO21346Q6UXR6 183 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SHISA6Q6ZSJ9 500 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 GKN2Q86XP6 184 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 WDFY1Q8IWB7 410 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 FOXRED2Q8IWF2 684 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 DMRTC2Q8IXT2 367 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RNF128Q8TEB7 428 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 THAP3Q8WTV1 239 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 OR10C1Q96KK4 312 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 DGAT2Q96PD7 388 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SERINC2Q96SA4 455 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SLC25A21Q9BQT8 299 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 PAPOLGQ9BWT3 736 aaKnown RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 NKX2-4Q9H2Z4 354 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 RNF122Q9H9V4 155 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 MMP26Q9NRE1 261 aa4.35□□□□□ -1.71
LIMA1-214ENST00000552783 NOSIPQ9Y314 301 aaKnown RBP4.35□□□□□ -1.71
LIMA1-214ENST00000552783 SDK2Q58EX2 2172 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 A0A1B0GW55 424 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 PRR19A6NJB7 356 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 PPIHO43447 177 aaKnown RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 STK17BO94768 372 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 YIF1AO95070 293 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 NKX2-2O95096 273 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 APBB3O95704 486 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 GPR75O95800 540 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 IL2RAP01589 272 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 TACSTD2P09758 323 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 DUX4L2P0CJ85 424 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 DUX4L3P0CJ86 424 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 DUX4L4P0CJ87 422 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 DUX4L5P0CJ88 424 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 DUX4L6P0CJ89 424 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 DUX4L7P0CJ90 424 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 SMIM6P0DI80 62 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 HNRNPA2B1P22626 353 aaKnown RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 HTR2CP28335 458 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 RBM34P42696 430 aaKnown RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 FHITP49789 147 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 CAV2P51636 162 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 LBX1P52954 281 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 ACTBP60709 375 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 ACTG1P63261 375 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 RPL18Q07020 188 aaKnown RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 SPEM2Q0P670 501 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 SKP2Q13309 424 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 SMCO1Q147U7 214 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 SGCAQ16586 387 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 ALG10Q5BKT4 473 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 OR2A2Q6IF42 318 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 DRAM2Q6UX65 266 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 JAGN1Q8N5M9 183 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 FAM160A2Q8N612 972 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 OR13H1Q8NG92 308 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 STOML3Q8TAV4 291 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 RNF141Q8WVD5 230 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 TCEAL3Q969E4 200 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 TM4SF19Q96DZ7 209 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 RHOVQ96L33 236 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 TGM7Q96PF1 710 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 SPACA5Q96QH8 159 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 TRIM2Q9C040 744 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 EGLN1Q9GZT9 426 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms