RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 NPIPB7O75200 414 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 HTR3BO95264 441 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 ZP3P21754 424 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 NPY4RP50391 375 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 CCR5P51681 352 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 FAM74A3Q4VXF1 159 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 CDCP2Q5VXM1 449 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 GRINAQ7Z429 371 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 ST7LQ8TDW4 575 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 TMEM231Q9H6L2 316 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 KLRF1Q9NZS2 232 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 KCNK7Q9Y2U2 307 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 ZNF814B7Z6K7 855 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 G3V3Y1 287 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 RAB27BO00194 218 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 RER1O15258 196 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 MPIG6BO95866 241 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 RNF4P78317 190 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 TAGLNQ01995 201 aaKnown RBP13.4□□□□□ -0.26
USP28-214ENST00000545540 SLC9A3R2Q15599 337 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 AWAT2Q6E213 333 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 TMEM185AQ8NFB2 350 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 MRPS24Q96EL2 167 aaKnown RBP13.4□□□□□ -0.26
USP28-214ENST00000545540 ZNF285Q96NJ3 590 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 SLC22A11Q9NSA0 550 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 ZNF319Q9P2F9 582 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 NCOA6Q14686 2063 aaPredicted RBP13.4□□□□□ -0.26
USP28-214ENST00000545540 AHCTF1Q8WYP5 2266 aa13.4□□□□□ -0.26
USP28-214ENST00000545540 F5H0A9 414 aaPredicted RBP13.39□□□□□ -0.27
USP28-214ENST00000545540 FADS1O60427 444 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 DLSTP36957 453 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 HSF1Q00613 529 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 PRAMEF20Q5VT98 475 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 GALNTL5Q7Z4T8 443 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 SMRP1Q8NCR6 262 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 STT3BQ8TCJ2 826 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 ASB17Q8WXJ9 295 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 TMEM41AQ96HV5 264 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 C8orf33Q9H7E9 229 aaPredicted RBP13.39□□□□□ -0.27
USP28-214ENST00000545540 TMEM131Q92545 1883 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 IGHV1OR21-1A0A087WYE8 117 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 RFPL4AA6NLU0 287 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 HMSDA8MTL9 139 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 RFPL4AL1F8VTS6 287 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 SOCS1O15524 211 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 B3GALNT1O75752 331 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 TTRP02766 147 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 VSIG8P0DPA2 414 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 C14orf28Q4W4Y0 310 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 C15orf40Q8WUR7 153 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 SLAMF6Q96DU3 332 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 TMPRSS13Q9BYE2 586 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 FN3KRPQ9HA64 309 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 MBD2Q9UBB5 411 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 NBEAQ8NFP9 2946 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 CPED1A4D0V7 1026 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 ADAP1O75689 374 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 STK17BO94768 372 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 EPHA4P54764 986 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 ROM1Q03395 351 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 NUP54Q7Z3B4 507 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 ABHD12BQ7Z5M8 362 aaPredicted RBP13.39□□□□□ -0.27
USP28-214ENST00000545540 OR10H5Q8NGA6 315 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 OR10S1Q8NGN2 331 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 MARVELD3Q96A59 401 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 SHARPINQ9H0F6 387 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 COMMD9Q9P000 198 aa13.39□□□□□ -0.27
USP28-214ENST00000545540 D6RAR5 112 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 H3BMH7 237 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 PHYHO14832 338 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 PMS2P2O95744 297 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 IGFBP3P17936 291 aaPredicted RBP13.38□□□□□ -0.27
USP28-214ENST00000545540 MECP2P51608 486 aaKnown RBP13.38□□□□□ -0.27
USP28-214ENST00000545540 PXT1Q8NFP0 134 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.38□□□□□ -0.27
USP28-214ENST00000545540 IFT46Q9NQC8 304 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 ASH2LQ9UBL3 628 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 ZNHIT1O43257 154 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 GUSBP08236 651 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 OR3A4PP47883 348 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 LIN37Q96GY3 246 aaPredicted RBP13.38□□□□□ -0.27
USP28-214ENST00000545540 FTCDNL1E5RQL4 147 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 TSPAN9O75954 239 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 IFI6P09912 130 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 ICAM2P13598 275 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 CRABP1P29762 137 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 BPIFCQ8NFQ6 507 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 CCDC107Q8WV48 283 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 PELOQ9BRX2 385 aaKnown RBP13.38□□□□□ -0.27
USP28-214ENST00000545540 ST6GALNAC5Q9BVH7 336 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 PBOV1Q9GZY1 135 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 OR2S2Q9NQN1 319 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 ASF1BQ9NVP2 202 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 KLHL13Q9P2N7 655 aa13.38□□□□□ -0.27
USP28-214ENST00000545540 ZDBF2Q9HCK1 2354 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 A0A0B4J2A0 478 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 KANTRA0A1W2PQU2 76 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 A8MXK9 166 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 H3BUI4 141 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 HPP00738 406 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms