RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 MRPS26Q9BYN8 205 aaKnown RBP16.43■□□□□ 0.22
TNFRSF1A-213ENST00000540022 NPDC1Q9NQX5 325 aaPredicted RBP16.43■□□□□ 0.22
TNFRSF1A-213ENST00000540022 BABAM2Q9NXR7 383 aa16.43■□□□□ 0.22
TNFRSF1A-213ENST00000540022 NPAP1Q9NZP6 1156 aa16.43■□□□□ 0.22
TNFRSF1A-213ENST00000540022 CRNNQ9UBG3 495 aaPredicted RBP16.43■□□□□ 0.22
TNFRSF1A-213ENST00000540022 ATPIF1Q9UII2 106 aa16.43■□□□□ 0.22
TNFRSF1A-213ENST00000540022 TEX15Q9BXT5 2789 aa16.43■□□□□ 0.22
TNFRSF1A-213ENST00000540022 F5H5K5 113 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 IGLV1-44P01699 117 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 TACSTD2P09758 323 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 CCL2P13500 99 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 PPP3CBP16298 524 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 STOMP27105 288 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 HSD11B1P28845 292 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 GTF2A1P52655 376 aaPredicted RBP16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 NEDD8Q15843 81 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 KRTAP27-1Q3LI81 207 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 C1QTNF12Q5T7M4 302 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 UBE2UQ5VVX9 321 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 FAM169BQ8N8A8 192 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 ZC3HAV1LQ96H79 300 aaKnown RBP16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 POM121L2Q96KW2 1035 aa16.42■□□□□ 0.22
TNFRSF1A-213ENST00000540022 SRSF10O75494 262 aaKnown RBP16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 INMTO95050 263 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 PNPP00491 289 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 DCTDP32321 178 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 ZNF83P51522 516 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 HGFACQ04756 655 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 ZNF367Q7RTV3 350 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 NAA40Q86UY6 237 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 LINC01560Q8TB33 94 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 RORBQ92753 470 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 MED18Q9BUE0 208 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 NIPAL2Q9H841 368 aa16.41■□□□□ 0.22
TNFRSF1A-213ENST00000540022 IGHV1-18A0A0C4DH31 117 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 PRSS44E7EML9 344 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 M0R135 149 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 CLPTM1O96005 669 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 CECR9P0C854 216 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 ANOS1P23352 680 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 PAX7P23759 505 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 APLNRP35414 380 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 MFGE8Q08431 387 aaPredicted RBP16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 WFDC8Q8IUA0 241 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 ZNF283Q8N7M2 679 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 SLC30A7Q8NEW0 376 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 FCGR1BQ92637 280 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 MUL1Q969V5 352 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 SPTSSAQ969W0 71 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 ZNF799Q96GE5 643 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 MGLLQ99685 303 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 SIRT4Q9Y6E7 314 aaPredicted RBP16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 HCFC1P51610 2035 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 C5orf49A4QMS7 147 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 TFAP2AP05549 437 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 ACSM4P0C7M7 580 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 HSMCR30P0CW71 290 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 JUNBP17275 347 aaPredicted RBP16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 CCNOP22674 350 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 CX3CR1P49238 355 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 GDI2P50395 445 aaKnown RBP16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 GBX2P52951 348 aaPredicted RBP16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 NANOS3P60323 173 aaKnown RBP16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 PSMA6P60900 246 aaKnown RBP16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 ACSM1Q08AH1 577 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 PAQR4Q8N4S7 273 aaPredicted RBP16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 ZFP41Q8N8Y5 198 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 COG8Q96MW5 612 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 OPALINQ96PE5 141 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 MOV10Q9HCE1 1003 aaKnown RBP16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 VCX3AQ9NNX9 186 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 BRD7Q9NPI1 651 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 TRIM36Q9NQ86 728 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 FAM206AQ9NX38 181 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 NDRG3Q9UGV2 375 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 SCOCQ9UIL1 159 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 KLF2Q9Y5W3 355 aaPredicted RBP16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 R4GMQ9 66 aa16.4■□□□□ 0.22
TNFRSF1A-213ENST00000540022 TMEM269A0A1B0GVZ9 245 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 M0R1B8 84 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 SLC2A1P11166 492 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 PSMB9P28065 219 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 MMP16P51512 607 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 TPTEP56180 551 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 ZNF121P58317 390 aaPredicted RBP16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 ZNF829Q3KNS6 432 aaPredicted RBP16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 SYT6Q5T7P8 510 aaPredicted RBP16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 DRAM2Q6UX65 266 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 SSX8Q7RTT4 187 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 PRSS45Q7RTY3 260 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 PPP1R14AQ96A00 147 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 DOK1Q99704 481 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 ST6GALNAC2Q9UJ37 374 aa16.39■□□□□ 0.21
TNFRSF1A-213ENST00000540022 C5orf63A6NC05 138 aa16.38■□□□□ 0.21
TNFRSF1A-213ENST00000540022 TUBAL3A6NHL2 446 aa16.38■□□□□ 0.21
TNFRSF1A-213ENST00000540022 LOC110117498-PIK3R3F6TDL0 507 aa16.38■□□□□ 0.21
TNFRSF1A-213ENST00000540022 SLC6A9P48067 706 aa16.38■□□□□ 0.21
TNFRSF1A-213ENST00000540022 TGM4P49221 684 aa16.38■□□□□ 0.21
TNFRSF1A-213ENST00000540022 GP2P55259 537 aaKnown RBP16.38■□□□□ 0.21
TNFRSF1A-213ENST00000540022 BDH1Q02338 343 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms