RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 LOC101059948A0A1B0GTJ6 334 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 OR2T1O43869 369 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 AHSA1O95433 338 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 DUS4LO95620 317 aaKnown RBP10.07□□□□□ -0.8
SYNE1-237ENST00000539504 IL33O95760 270 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 SERPINA5P05154 406 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 AKR1C3P42330 323 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 CYCSP99999 105 aaKnown RBP10.07□□□□□ -0.8
SYNE1-237ENST00000539504 FMODQ06828 376 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 GFOD2Q3B7J2 385 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 FAM76BQ5HYJ3 339 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 TMEM244Q5VVB8 128 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 ZNF813Q6ZN06 617 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 GALNTL5Q7Z4T8 443 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 TMEM151BQ8IW70 566 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 RTN4RQ9BZR6 473 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 RHOFQ9HBH0 211 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 SLC22A11Q9NSA0 550 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 FREM3P0C091 2139 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 EML5Q05BV3 1969 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 NUDT21O43809 227 aaKnown RBP10.07□□□□□ -0.8
SYNE1-237ENST00000539504 MPIG6BO95866 241 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 PGCP20142 388 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 SLC6A8P48029 635 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 EMP2P54851 167 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 PJVKQ0ZLH3 352 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 DHRS7BQ6IAN0 325 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-237ENST00000539504 KLHL24Q6TFL4 600 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 OR4A4PQ8NGN8 299 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 GLYATL2Q8WU03 294 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 SFT2D1Q8WV19 159 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 C8orf44Q96CB5 159 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 RRNAD1Q96FB5 475 aaKnown RBP10.07□□□□□ -0.8
SYNE1-237ENST00000539504 CFHR5Q9BXR6 569 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 TXNIPQ9H3M7 391 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 MMP26Q9NRE1 261 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 OBP2AQ9NY56 170 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 CDH23Q9H251 3354 aa10.07□□□□□ -0.8
SYNE1-237ENST00000539504 IGLV1-36A0A0B4J1U3 117 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 TEX13DA0A0J9YY54 714 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-237ENST00000539504 TNFRSF10CO14798 259 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 SYT7O43581 403 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 FBXO24O75426 580 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 MED6O75586 246 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 HTR3BO95264 441 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 SFTPBP07988 381 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 CRABP1P29762 137 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 ROM1Q03395 351 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 SRSF4Q08170 494 aaKnown RBP10.06□□□□□ -0.8
SYNE1-237ENST00000539504 SGCBQ16585 318 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 PGAP1Q75T13 922 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 ZSCAN4Q8NAM6 433 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-237ENST00000539504 OR10H5Q8NGA6 315 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 NANPQ8TBE9 248 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 AQP3Q92482 292 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 FGF14Q92915 247 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 UQCC2Q9BRT2 126 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 PTGES2Q9H7Z7 377 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 POLR1DQ9Y2S0 133 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 TMED7-TICAM2A0A0A6YYA0 188 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 MSGN1A6NI15 193 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 TTLL8A6PVC2 850 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 TMEM150CB9EJG8 249 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 SGCEO43556 437 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 IL2RAP01589 272 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 IGFBP3P17936 291 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-237ENST00000539504 RAB5BP61020 215 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 SNRPEP62304 92 aaKnown RBP10.06□□□□□ -0.8
SYNE1-237ENST00000539504 ARFRP1Q13795 201 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 SMCO1Q147U7 214 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 EBPQ15125 230 aaKnown RBP10.06□□□□□ -0.8
SYNE1-237ENST00000539504 KIF26BQ2KJY2 2108 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 ZNF528Q3MIS6 628 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 RTN4RL2Q86UN3 420 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 NKAIN3Q8N8D7 197 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 NUBPLQ8TB37 319 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 LAT2Q9GZY6 243 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 ZNF107Q9UII5 783 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-237ENST00000539504 A0A1W2PQF6 199 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 NPIPA5E9PKD4 350 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 FGF16O43320 207 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 WISP1O95388 367 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 HOXC4P09017 264 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-237ENST00000539504 HOXB5P09067 269 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 FSTP19883 344 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 HSD17B7P56937 341 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 TAS2R31P59538 309 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 FNDC7Q5VTL7 733 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 ANGPTL5Q86XS5 388 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 OR2I1PQ8NGU4 316 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 TSLPQ969D9 159 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 COA4Q9NYJ1 87 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 NPIPA1Q9UND3 350 aa10.06□□□□□ -0.8
SYNE1-237ENST00000539504 KIR2DS5A0A0G2JLQ3 304 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 A0A0G2JNG1 304 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 FAM221BA6H8Z2 402 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 KIR2DS3K7RE56 304 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 HLA-DOBP13765 273 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 MUC1P15941 1255 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-237ENST00000539504 CFPP27918 469 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms