RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 TMEM18Q96B42 140 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 PARP12Q9H0J9 701 aaKnown RBP9.71□□□□□ -0.86
CLIP1-209ENST00000537178 SLC25A32Q9H2D1 315 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 LIN7CQ9NUP9 197 aaKnown RBP9.71□□□□□ -0.86
CLIP1-209ENST00000537178 ADAMTS5Q9UNA0 930 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 LAMP3Q9UQV4 416 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 HS3ST3A1Q9Y663 406 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 E5RGE8 158 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 PRSS44E7EML9 344 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 TNFRSF10CO14798 259 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 TBXA2RP21731 343 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 BCL6P41182 706 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 OR10A3P58181 314 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 HSF1Q00613 529 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 C17orf107Q6ZR85 190 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 CABLES2Q9BTV7 478 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 NDUFB11Q9NX14 153 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 NTNG1Q9Y2I2 539 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 NSG2Q9Y328 171 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 SIT1Q9Y3P8 196 aa9.71□□□□□ -0.86
CLIP1-209ENST00000537178 TO15178 435 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 MRPL19P49406 292 aaKnown RBP9.7□□□□□ -0.86
CLIP1-209ENST00000537178 CLN3Q13286 438 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 HAGHQ16775 308 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 TMEM52BQ4KMG9 183 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 NKAIN1Q4KMZ8 207 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 DHRS4L2Q6PKH6 230 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 GABRG1Q8N1C3 465 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 OR10X1Q8NGY0 326 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 HLA-CQ95604 372 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 GAREM1Q9H706 876 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 MEIKINA0A087WXM9 373 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 SERTM2A0A1B0GWG4 89 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 ZNF354AO60765 605 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-209ENST00000537178 CRYAAP02489 173 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 FABP9Q0Z7S8 132 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 PCK2Q16822 640 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 CTU2Q2VPK5 515 aaKnown RBP9.7□□□□□ -0.86
CLIP1-209ENST00000537178 MAVSQ7Z434 540 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 ZNF573Q86YE8 665 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 TCTE3Q8IZS6 198 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 SLC24A4Q8NFF2 622 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 OR13D1Q8NGV5 346 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 CCDC74BQ96LY2 380 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 C19orf53Q9UNZ5 99 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-209ENST00000537178 WDR90Q96KV7 1748 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 PRRG2O14669 202 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 ZNF749O43361 778 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 PRKRAO75569 313 aaKnown RBP9.7□□□□□ -0.86
CLIP1-209ENST00000537178 F10P00742 488 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 CD37P11049 281 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 TGM1P22735 817 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 SOX18P35713 384 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 KIR3DX1Q9H7L2 352 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 TAS2R4Q9NYW5 299 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 CTSFQ9UBX1 484 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 ARL2-SNX15V9GYD0 113 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 RPL12P30050 165 aaKnown RBP9.7□□□□□ -0.86
CLIP1-209ENST00000537178 CSRP3P50461 194 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 PDZD11Q5EBL8 140 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 RPUSD4Q96CM3 377 aaKnown RBP9.7□□□□□ -0.86
CLIP1-209ENST00000537178 SLAMF6Q96DU3 332 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 IP6K3Q96PC2 410 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 DHRS9Q9BPW9 319 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 SMIM7Q9BQ49 75 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 CRLF2Q9HC73 371 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 CMC2Q9NRP2 79 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 ACOXLQ9NUZ1 547 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 THAP10Q9P2Z0 257 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-209ENST00000537178 CLCF1Q9UBD9 225 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 PLXNA1Q9UIW2 1896 aa9.7□□□□□ -0.86
CLIP1-209ENST00000537178 HSPB2A8KAH6 182 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 TARM1B6A8C7 271 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 GJB3O75712 270 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 ALX3O95076 343 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 CD22P20273 847 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 CD1CP29017 333 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 ARR3P36575 388 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 LIM2P55344 173 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 HSPB2Q16082 182 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 DUSP5Q16690 384 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 USP51Q70EK9 711 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 TRIB1Q96RU8 372 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 PLA2G12AQ9BZM1 189 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 ASH2LQ9UBL3 628 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 AQP7P3A6NL99 342 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 RFPL4AA6NLU0 287 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 RFPL4AL1F8VTS6 287 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 M0R135 149 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 CD27P26842 260 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 CST5P28325 142 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-209ENST00000537178 PIGAP37287 484 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 SRP9P49458 86 aaKnown RBP9.69□□□□□ -0.86
CLIP1-209ENST00000537178 TPBGQ13641 420 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 PRTGQ2VWP7 1150 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 FAM26DQ5JW98 314 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 RFLNAQ6ZTI6 216 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 LRRTM1Q86UE6 522 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 NKAIN4Q8IVV8 208 aa9.69□□□□□ -0.86
CLIP1-209ENST00000537178 OR5AS1Q8N127 324 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms