RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 CEMP1Q6PRD7 247 aaPredicted RBP2.08□□□□□ -2.08
CD44-233ENST00000531141 KDELC1Q6UW63 502 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 NTM-AS1Q6ZSK4 140 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 PRSS58Q8IYP2 241 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 LIX1Q8N485 282 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 B3GNT7Q8NFL0 401 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 SERPINB12Q96P63 405 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 ZNF2Q9BSG1 426 aaPredicted RBP2.08□□□□□ -2.08
CD44-233ENST00000531141 ING2Q9H160 280 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 CWH43Q9H720 699 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 FAM49BQ9NUQ9 324 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 GPATCH2LQ9NWQ4 482 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 CTSFQ9UBX1 484 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 GGA2Q9UJY4 613 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 GOLT1BQ9Y3E0 138 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 ASB3Q9Y575 518 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 CLTCL1P53675 1640 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 PIK3C2AO00443 1686 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 ANKRD30AQ9BXX3 1397 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 KNDC1Q76NI1 1749 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 TRPM3Q9HCF6 1732 aaPredicted RBP2.08□□□□□ -2.08
CD44-233ENST00000531141 CEP162Q5TB80 1403 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 SCN4AP35499 1836 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 BRCA1P38398 1863 aaKnown RBP2.07□□□□□ -2.08
CD44-233ENST00000531141 AKAP11Q9UKA4 1901 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 LMO7Q8WWI1 1683 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 GLYATL1P3A0A0U1RQE8 302 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 ZNF816-ZNF321PA0A0X1KG74 233 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 DPM1O60762 260 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 CLPXO76031 633 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 RCBTB2O95199 551 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 CST1P01037 141 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 LINC00869P0C866 280 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 POLR2MP0CAP2 368 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 RAB3BP20337 219 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 F2RP25116 425 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 HNRNPH3P31942 346 aaKnown RBP2.07□□□□□ -2.08
CD44-233ENST00000531141 NSG1P42857 185 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 CX3CR1P49238 355 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 MXD1Q05195 221 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 TWF1Q12792 350 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 PON2Q15165 354 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 PPP1R7Q15435 360 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 RNASEKQ6P5S7 137 aaKnown RBP2.07□□□□□ -2.08
CD44-233ENST00000531141 ARL9Q6T311 187 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 TMEM107Q6UX40 140 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 Q6ZSR3 168 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 NEGR1Q7Z3B1 354 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 OR9K2Q8NGE7 335 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 OR10J6PQ8NGY7 276 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 KCNG3Q8TAE7 436 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 SHC3Q92529 594 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 NARS2Q96I59 477 aaKnown RBP2.07□□□□□ -2.08
CD44-233ENST00000531141 CNDP1Q96KN2 507 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 PKNOX2Q96KN3 472 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 ZNF681Q96N22 645 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 CAMK2N2Q96S95 79 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 METTL7AQ9H8H3 244 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 KCNJ16Q9NPI9 418 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 SLC2A8Q9NY64 477 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 CTNNA3Q9UI47 895 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 KCNE3Q9Y6H6 103 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 KIAA1551Q9HCM1 1747 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 CRYBG1Q9Y4K1 1723 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 COL1A2P08123 1366 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 ANKRD36BQ8N2N9 1353 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 TRPM7Q96QT4 1865 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 MYOM3Q5VTT5 1437 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 PPIP5K1Q6PFW1 1433 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 ANKARQ7Z5J8 1434 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 NSD3Q9BZ95 1437 aa2.07□□□□□ -2.08
CD44-233ENST00000531141 IQGAP3Q86VI3 1631 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 LY75O60449 1722 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 ITSN1Q15811 1721 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 PAPPA2Q9BXP8 1791 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 H0Y8G0 127 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 MPZL1O95297 269 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 CD5P06127 495 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 CRYGBP07316 175 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 UBTFL6P0CB48 400 aaPredicted RBP2.06□□□□□ -2.08
CD44-233ENST00000531141 ZNF14P17017 642 aaPredicted RBP2.06□□□□□ -2.08
CD44-233ENST00000531141 CHMLP26374 656 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 FOXN2P32314 431 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 TNNT2P45379 298 aaPredicted RBP2.06□□□□□ -2.08
CD44-233ENST00000531141 SULT1E1P49888 294 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 ADARB1P78563 741 aaKnown RBP2.06□□□□□ -2.08
CD44-233ENST00000531141 PRSS8Q16651 343 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 MAJINQ3KP22 176 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 PTPN20Q4JDL3 420 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 CEP55Q53EZ4 464 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 TMEM31Q5JXX7 168 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 SLC25A34Q6PIV7 304 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 ZNF836Q6ZNA1 936 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 USP50Q70EL3 339 aaPredicted RBP2.06□□□□□ -2.08
CD44-233ENST00000531141 NIPA1Q7RTP0 329 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 CALHM1Q8IU99 346 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 LGI3Q8N145 548 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 C15orf40Q8WUR7 153 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 ZNF606Q8WXB4 792 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 ESR2Q92731 530 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms