RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZNF582Q96NG8 517 aaPredicted RBP9.51□□□□□ -0.89
VPS28-214ENST00000531032 COQ7Q99807 217 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 SLC30A2Q9BRI3 323 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 SSBP3Q9BWW4 388 aaPredicted RBP9.51□□□□□ -0.89
VPS28-214ENST00000531032 C1QTNF5Q9BXJ0 243 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 NUAK2Q9H093 628 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 HDHD2Q9H0R4 259 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 RERGLQ9H628 205 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 TMEM165Q9HC07 324 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 PTTG3PQ9NZH4 202 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 NDUFAF4Q9P032 175 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 LHFPL6Q9Y693 200 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 V9GYQ6 96 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 IGHV2-70DA0A0C4DH43 119 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 IQCF6A8MYZ5 107 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 H0YL77 283 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 DCTN6O00399 190 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 SOCS2O14508 198 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 MLNRO43193 412 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 CYB5R3P00387 301 aaPredicted RBP9.5□□□□□ -0.89
VPS28-214ENST00000531032 PLATP00750 562 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 IGHV4-38-2P0DP08 117 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 RPS2P15880 293 aaKnown RBP9.5□□□□□ -0.89
VPS28-214ENST00000531032 CDKN2AP42771 156 aaKnown RBP9.5□□□□□ -0.89
VPS28-214ENST00000531032 SRP9P49458 86 aaKnown RBP9.5□□□□□ -0.89
VPS28-214ENST00000531032 RPS6KA3P51812 740 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 COX10Q12887 443 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 KRTAP27-1Q3LI81 207 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 GLYATQ6IB77 296 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 C16orf89Q6UX73 402 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 BTNL3Q6UXE8 466 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 LRRN1Q6UXK5 716 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 COLCA1Q6ZS62 124 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 KLBQ86Z14 1044 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 PARP8Q8N3A8 854 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 GJC3Q8NFK1 279 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 OR52E2Q8NGJ4 325 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 ZNF420Q8TAQ5 688 aaPredicted RBP9.5□□□□□ -0.89
VPS28-214ENST00000531032 SLC25A28Q96A46 364 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 UPRTQ96BW1 309 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 DHRS1Q96LJ7 313 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 MS4A7Q9GZW8 240 aaPredicted RBP9.5□□□□□ -0.89
VPS28-214ENST00000531032 NDE1Q9NXR1 346 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 MIOXQ9UGB7 285 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 TAGLN3Q9UI15 199 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 MAGEL2Q9UJ55 1249 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 POLR1DQ9Y2S0 133 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 IER3IP1Q9Y5U9 82 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 TRRAPQ9Y4A5 3859 aa9.5□□□□□ -0.89
VPS28-214ENST00000531032 IGLV1-36A0A0B4J1U3 117 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 TRBV4-1A0A0J9YWV2 114 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 UNC119BA6NIH7 251 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 LRRC30A6NM36 301 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 F5H5P2 479 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 KCNAB3O43448 404 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 ZNF205O95201 554 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 GPANK1O95872 356 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 RHCEP18577 417 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 CRABP1P29762 137 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 GATA4P43694 442 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 MTNR1AP48039 350 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 GNB2P62879 340 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 IL13RA1P78552 427 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 SEC23BQ15437 767 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 SLC9A3R2Q15599 337 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 MEP1BQ16820 701 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 RSPO1Q2MKA7 263 aaPredicted RBP9.49□□□□□ -0.89
VPS28-214ENST00000531032 ZNF404Q494X3 552 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 SAMD4BQ5PRF9 694 aaKnown RBP9.49□□□□□ -0.89
VPS28-214ENST00000531032 LEG1Q6P5S2 330 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 DNM1P34Q6PK57 102 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 MOGAT3Q86VF5 341 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 C1orf87Q8N0U7 546 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 PGAM4Q8N0Y7 254 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 BHLHE23Q8NDY6 225 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 RAB40AQ8WXH6 277 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 MCUR1Q96AQ8 359 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 NEIL1Q96FI4 390 aaPredicted RBP9.49□□□□□ -0.89
VPS28-214ENST00000531032 PLEKHA8Q96JA3 519 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 C7orf34Q96L11 122 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 TSSK2Q96PF2 358 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 TMEM246Q9BRR3 403 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 FUZQ9BT04 418 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 UNKLQ9H9P5 680 aaKnown RBP9.49□□□□□ -0.89
VPS28-214ENST00000531032 AURKCQ9UQB9 309 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 DOCK11Q5JSL3 2073 aa9.49□□□□□ -0.89
VPS28-214ENST00000531032 TRAV40A0A0B4J280 105 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 IGHV3-64DA0A0J9YX35 117 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 KIR2DS1A0A191URI9 304 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 POM121CA8CG34 1229 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 SELEP16581 610 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 PMELP40967 661 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 SPIBQ01892 262 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 CORO6Q6QEF8 472 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 SMARCD3Q6STE5 483 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 CFAP77Q6ZQR2 320 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 NLRC3Q7RTR2 1065 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 OR6V1Q8N148 313 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 CELF2-AS1Q8N7Q2 184 aa9.48□□□□□ -0.89
VPS28-214ENST00000531032 SLC26A10Q8NG04 563 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms