RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 UBL3O95164 117 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 PTHP01270 115 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 APOC1P02654 83 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 MMP7P09237 267 aaPredicted RBP6.45□□□□□ -1.38
CD44-228ENST00000528455 LIMS3P0CW19 117 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 LIMS4P0CW20 117 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 MYL12AP19105 171 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 CD79BP40259 229 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 HCCSP53701 268 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 FOXG1P55316 489 aaPredicted RBP6.45□□□□□ -1.38
CD44-228ENST00000528455 RAB1AP62820 205 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ADORA2A-AS1P86434 159 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ACSM1Q08AH1 577 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 DBPQ10586 325 aaPredicted RBP6.45□□□□□ -1.38
CD44-228ENST00000528455 ECH1Q13011 328 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 MRPL28Q13084 256 aaKnown RBP6.45□□□□□ -1.38
CD44-228ENST00000528455 AQP6Q13520 282 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ENDOGQ14249 297 aaKnown RBP6.45□□□□□ -1.38
CD44-228ENST00000528455 MEP1BQ16820 701 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 CDONQ4KMG0 1287 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 TIMM23BQ5SRD1 257 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ZNF684Q5T5D7 378 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 SP5Q6BEB4 398 aaPredicted RBP6.45□□□□□ -1.38
CD44-228ENST00000528455 ZNF773Q6PK81 442 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 TMPRSS11AQ6ZMR5 421 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 STAC2Q6ZMT1 411 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 SLC16A14Q7RTX9 510 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ZNF679Q8IYX0 411 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 SYS1Q8N2H4 156 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 LRRC18Q8N456 261 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ZNF808Q8N4W9 903 aaPredicted RBP6.45□□□□□ -1.38
CD44-228ENST00000528455 OR10H4Q8NGA5 316 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 OR6N2Q8NGY6 317 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ST7LQ8TDW4 575 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 SNX33Q8WV41 574 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 RNF133Q8WVZ7 376 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 HSD17B8Q92506 261 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 FBXO17Q96EF6 278 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ALKBH3Q96Q83 286 aaPredicted RBP6.45□□□□□ -1.38
CD44-228ENST00000528455 SH3GL3Q99963 347 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ABHD6Q9BV23 337 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 MROQ9BYG7 248 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 CCDC90BQ9GZT6 254 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 NIPAL2Q9H841 368 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 ISYNA1Q9NPH2 558 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 KCNJ16Q9NPI9 418 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 BABAM2Q9NXR7 383 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 GALNT8Q9NY28 637 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 KLF2Q9Y5W3 355 aaPredicted RBP6.45□□□□□ -1.38
CD44-228ENST00000528455 LHFPL6Q9Y693 200 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 CACNA1CQ13936 2221 aa6.45□□□□□ -1.38
CD44-228ENST00000528455 METTL15A6NJ78 407 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 ACOD1A6NK06 481 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 OR5H1A6NKK0 313 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 PRSS44E7EML9 344 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 LYZL6O75951 148 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 CLPTM1O96005 669 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 HTR1AP08908 422 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 MRPL3P09001 348 aaKnown RBP6.44□□□□□ -1.38
CD44-228ENST00000528455 SPARCP09486 303 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 COX5BP10606 129 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 B4GALT1P15291 398 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 CBR1P16152 277 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 PPP3CBP16298 524 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 NAA10P41227 235 aaPredicted RBP6.44□□□□□ -1.38
CD44-228ENST00000528455 ETV1P50549 477 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 ASCL1P50553 236 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 ACTA2P62736 377 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 ACTG2P63267 376 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 PSG4Q00888 419 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 ZNF85Q03923 595 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 PLP2Q04941 152 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 PIGFQ07326 219 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 FAM27E3Q08E93 113 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 SCRN3Q0VDG4 424 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 GPR50Q13585 617 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 EIF2B1Q14232 305 aaKnown RBP6.44□□□□□ -1.38
CD44-228ENST00000528455 SPHARQ15513 63 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 C3orf36Q3SXR2 165 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 CCDC58Q4VC31 144 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 ELFN2Q5R3F8 820 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 TMEM53Q6P2H8 277 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 ZNF322Q6U7Q0 402 aaPredicted RBP6.44□□□□□ -1.38
CD44-228ENST00000528455 BHLHA15Q7RTS1 189 aaPredicted RBP6.44□□□□□ -1.38
CD44-228ENST00000528455 DCXRQ7Z4W1 244 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 KRT77Q7Z794 578 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 LUZP2Q86TE4 346 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 CXorf67Q86X51 503 aaPredicted RBP6.44□□□□□ -1.38
CD44-228ENST00000528455 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.44□□□□□ -1.38
CD44-228ENST00000528455 KLHL36Q8N4N3 616 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 RELL2Q8NC24 303 aaPredicted RBP6.44□□□□□ -1.38
CD44-228ENST00000528455 ZNF485Q8NCK3 441 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 IL17RDQ8NFM7 739 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 OR52N1Q8NH53 320 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 CA5BP1Q8WTZ4 195 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 FCGR1BQ92637 280 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 MUCL1Q96DR8 90 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 SLAMF6Q96DU3 332 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 FOXN4Q96NZ1 517 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 OR8B4Q96RC9 309 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms