RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 LINC00471Q8N535 108 aa9□□□□□ -0.97
CD44-227ENST00000528086 LINC01356Q8N9X3 169 aa9□□□□□ -0.97
CD44-227ENST00000528086 GJC3Q8NFK1 279 aa9□□□□□ -0.97
CD44-227ENST00000528086 ST7LQ8TDW4 575 aa9□□□□□ -0.97
CD44-227ENST00000528086 GIPC3Q8TF64 312 aa9□□□□□ -0.97
CD44-227ENST00000528086 HDHD2Q9H0R4 259 aa9□□□□□ -0.97
CD44-227ENST00000528086 SAP30LQ9HAJ7 183 aa9□□□□□ -0.97
CD44-227ENST00000528086 DDX28Q9NUL7 540 aaKnown RBP9□□□□□ -0.97
CD44-227ENST00000528086 TBC1D23Q9NUY8 699 aa9□□□□□ -0.97
CD44-227ENST00000528086 STAB1Q9NY15 2570 aa9□□□□□ -0.97
CD44-227ENST00000528086 GYG2O15488 501 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 TIMM8AO60220 97 aaPredicted RBP8.99□□□□□ -0.97
CD44-227ENST00000528086 DNAJC8O75937 253 aaPredicted RBP8.99□□□□□ -0.97
CD44-227ENST00000528086 CST1P01037 141 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 IGHV2-70P01814 119 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 IGHV2-5P01817 119 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 RAC2P15153 192 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 ARHGDIAP52565 204 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 CDK5Q00535 292 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 GK2Q14410 553 aaPredicted RBP8.99□□□□□ -0.97
CD44-227ENST00000528086 RPL13AP3Q6NVV1 102 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 DNM1P34Q6PK57 102 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 PRSS45Q7RTY3 260 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 C1orf174Q8IYL3 243 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 SNX33Q8WV41 574 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 ITLN1Q8WWA0 313 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 DCLRE1CQ96SD1 692 aaKnown RBP8.99□□□□□ -0.97
CD44-227ENST00000528086 PITX2Q99697 317 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 SLC30A2Q9BRI3 323 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 LPAR2Q9HBW0 351 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 G6PC2Q9NQR9 355 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 CMC2Q9NRP2 79 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 PDP1Q9P0J1 537 aaPredicted RBP8.99□□□□□ -0.97
CD44-227ENST00000528086 ZNF319Q9P2F9 582 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 CDC42EP3Q9UKI2 254 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 KCNS2Q9ULS6 477 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 POLR1DQ9Y2S0 133 aa8.99□□□□□ -0.97
CD44-227ENST00000528086 IGHV3-64DA0A0J9YX35 117 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 IQCF6A8MYZ5 107 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 F5H5K5 113 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 GSTM3P21266 225 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 ZFP36P26651 326 aaKnown RBP8.98□□□□□ -0.97
CD44-227ENST00000528086 EPHA2P29317 976 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 DVL1P1P54792 670 aaPredicted RBP8.98□□□□□ -0.97
CD44-227ENST00000528086 CBX1P83916 185 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 TNFAIP6P98066 277 aaPredicted RBP8.98□□□□□ -0.97
CD44-227ENST00000528086 FLOT2Q14254 428 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 MOGQ16653 247 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 DNAL1Q4LDG9 190 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 TEX30Q5JUR7 227 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 TMEM236Q5W0B7 351 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 SPATA24Q86W54 205 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 TIGD4Q8IY51 512 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 ZNF283Q8N7M2 679 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 PROKR2Q8NFJ6 384 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 BBS1Q8NFJ9 593 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 OR2T33Q8NG76 320 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 OR2Z1Q8NG97 314 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 OR10AD1Q8NGE0 317 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 OR52L1Q8NGH7 329 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 OR2T4Q8NH00 348 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 CCL17Q92583 94 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 APOBEC3DQ96AK3 386 aaPredicted RBP8.98□□□□□ -0.97
CD44-227ENST00000528086 ELMOD3Q96FG2 381 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 ATF6BQ99941 703 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 BEX2Q9BXY8 128 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 PPP1R3EQ9H7J1 279 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 ZNF665Q9H7R5 613 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 MARCH7Q9H992 704 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 CYSLTR2Q9NS75 346 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 GPR160Q9UJ42 338 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 KCNG2Q9UJ96 466 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 KLHDC2Q9Y2U9 406 aa8.98□□□□□ -0.97
CD44-227ENST00000528086 PRR32B1ATL7 298 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 B4DSR2 109 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 F5H5P2 479 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 J3QW42 95 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 ZNF593O00488 134 aaPredicted RBP8.97□□□□□ -0.97
CD44-227ENST00000528086 PLPP2O43688 288 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 TIPRLO75663 272 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 HLA-DQA2P01906 255 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 HLA-DPB1P04440 258 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 MSMBP08118 114 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 SLC2A5P22732 501 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 TUBG1P23258 451 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 GRK5P34947 590 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 LIPAP38571 399 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 RGS6P49758 472 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 DAPP51397 102 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 MMP16P51512 607 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 SEC61A1P61619 476 aaKnown RBP8.97□□□□□ -0.97
CD44-227ENST00000528086 ZNF92Q03936 586 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 MAB21L1Q13394 359 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 GINS1Q14691 196 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 ZMYND11Q15326 602 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 KRTAP24-1Q3LI83 254 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 KLHL12Q53G59 568 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 FAM201AQ5SY85 155 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 FAHD1Q6P587 224 aa8.97□□□□□ -0.97
CD44-227ENST00000528086 ZNF771Q7L3S4 317 aaPredicted RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms