RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ENY2Q9NPA8 101 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 UQCC1Q9NVA1 299 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 A0A0A6YYD5 115 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 LOC100289279A0A1B0GTE1 492 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 SLC35A1P78382 337 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 ZNF547Q8IVP9 402 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 LINC01555Q8NAE3 123 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 MIB2Q96AX9 1013 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 SMIM19Q96E16 107 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 EMC6Q9BV81 110 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 MBD1Q9UIS9 605 aaPredicted RBP11.92□□□□□ -0.5
TCOF1-213ENST00000514442 EXOGQ9Y2C4 368 aaKnown RBP11.92□□□□□ -0.5
TCOF1-213ENST00000514442 EMC9Q9Y3B6 208 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 KCNE3Q9Y6H6 103 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 URGCP-MRPS24S4R325 110 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 TMEM127O75204 238 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 RAE1P78406 368 aaKnown RBP11.92□□□□□ -0.5
TCOF1-213ENST00000514442 OR2B11Q5JQS5 317 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 MOB3CQ70IA8 216 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 MDGA2Q7Z553 956 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 CAMKMTQ7Z624 323 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 LURAP1LQ8IV03 231 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 TMEM106AQ96A25 262 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 TSPAN10Q9H1Z9 355 aaPredicted RBP11.92□□□□□ -0.5
TCOF1-213ENST00000514442 C1orf198Q9H425 327 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 WDR76Q9H967 626 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 OPN4Q9UHM6 478 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 MOKQ9UQ07 419 aa11.92□□□□□ -0.5
TCOF1-213ENST00000514442 TNS1Q9HBL0 1735 aaKnown RBP11.92□□□□□ -0.5
TCOF1-213ENST00000514442 GLB1P16278 677 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 KLF9Q13886 244 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-213ENST00000514442 MEP1BQ16820 701 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 RPS19BP1Q86WX3 136 aaKnown RBP11.91□□□□□ -0.5
TCOF1-213ENST00000514442 GALNT16Q8N428 558 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 OR5D18Q8NGL1 313 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 OR2G2Q8NGZ5 317 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 FAM3DQ96BQ1 224 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 THOC3Q96J01 351 aaKnown RBP11.91□□□□□ -0.5
TCOF1-213ENST00000514442 ARRDC1-AS1Q9H2J1 176 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 MED16Q9Y2X0 877 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 MAP1BP46821 2468 aaKnown RBP11.91□□□□□ -0.5
TCOF1-213ENST00000514442 TMEM212A6NML5 194 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 ANKRD30BLA7E2S9 258 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 CELA2BP08218 269 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-213ENST00000514442 IRF2P14316 349 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 GCH1P30793 250 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 EMDP50402 254 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 CARD18P57730 90 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 OR56B1Q8NGI3 324 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 GOT1L1Q8NHS2 421 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-213ENST00000514442 DERL3Q96Q80 235 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 OR11A1Q9GZK7 315 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 TUBG2Q9NRH3 451 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 RGPD4Q7Z3J3 1758 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 LOC102725191A0A1B0GVB3 256 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 P2RY10O00398 339 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 CD3DP04234 171 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 AGFG1P52594 562 aaKnown RBP11.91□□□□□ -0.5
TCOF1-213ENST00000514442 C1orf87Q8N0U7 546 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 LFNGQ8NES3 379 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 CCDC74BQ96LY2 380 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 NIPSNAP3BQ9BS92 247 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 NOSIPQ9Y314 301 aaKnown RBP11.91□□□□□ -0.5
TCOF1-213ENST00000514442 CCL27Q9Y4X3 112 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 FAM166BA8MTA8 275 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 LINC00587B1AMM8 73 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 PHOX2AO14813 284 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 PPIAP62937 165 aaKnown RBP11.91□□□□□ -0.5
TCOF1-213ENST00000514442 SEZ6L2Q6UXD5 910 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 ZNF793Q6ZN11 406 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 OR1S1Q8NH92 325 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 FAM213BQ8TBF2 198 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 MEGF10Q96KG7 1140 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 SGCZQ96LD1 299 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 KCNJ15Q99712 375 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 PAPOLGQ9BWT3 736 aaKnown RBP11.91□□□□□ -0.5
TCOF1-213ENST00000514442 PRO1933Q9H354 126 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 RASL12Q9NYN1 266 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 ATG2BQ96BY7 2078 aa11.91□□□□□ -0.5
TCOF1-213ENST00000514442 IGHV3-9P01782 118 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 RBP2P50120 134 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 DUSP8Q13202 625 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 ALKBH1Q13686 389 aaKnown RBP11.9□□□□□ -0.5
TCOF1-213ENST00000514442 CDK5R1Q15078 307 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 ZNF383Q8NA42 475 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 UBL7Q96S82 380 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-213ENST00000514442 CA10Q9NS85 328 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 ZNF275Q9NSD4 429 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-213ENST00000514442 KCNIP1Q9NZI2 227 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 FOXJ3Q9UPW0 622 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 A0A087X0M5 115 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 A0A1B0GX30 115 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 OTOL1A6NHN0 477 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-213ENST00000514442 SIGLEC5O15389 551 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 MAGEB4O15481 346 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-213ENST00000514442 STK17BO94768 372 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 THBS1P07996 1170 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 HTR2CP28335 458 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 CYB561P49447 251 aa11.9□□□□□ -0.5
TCOF1-213ENST00000514442 TFF2Q03403 129 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms